PDB entry 5f5c
View 5f5c on RCSB PDB site
Description: Crystal Structure of human JMJD2D complexed with KDOPP7
Class: oxidoreductase
Keywords: DOUBLE-STRANDED BETA HELIX, DEMETHYLASE, OXYGENASE, OXIDOREDUCTASE, Structural Genomics, Structural Genomics Consortium, SGC
Deposited on
2015-12-04, released
2015-12-30
The last revision prior to the SCOPe 2.08 freeze date was dated
2016-09-14, with a file datestamp of
2016-09-09.
Experiment type: XRAY
Resolution: 1.88 Å
R-factor: N/A
AEROSPACI score: 0.35
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Lysine-specific demethylase 4D
Species: Homo sapiens [TaxId:9606]
Gene: KDM4D, JHDM3D, JMJD2D
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d5f5ca_ - Heterogens: ZN, NI, EDO, SO4, 5V3, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>5f5cA (A:)
yfqsmetmkskancaqnpncnimifhptkeefndfdkyiaymesqgahraglakiippke
wkaretydniseiliatplqqvasgragvftqyhkkkkamtvgeyrhlanskkyqtpphq
nfedlerkywknriynspiygadisgslfdentkqwnlghlgtiqdllekecgvviegvn
tpylyfgmwkttfawhtedmdlysinylhlgepktwyvvppehgqrlerlarelfpgssr
gcgaflrhkvalisptvlkengipfnritqeagefmvtfpygyhagfnhgfncaeainfa
tprwidygkmasqcscgearvtfsmdafvrilqperydlwkrgqdr
Sequence, based on observed residues (ATOM records): (download)
>5f5cA (A:)
aqnpncnimifhptkeefndfdkyiaymesqgahraglakiippkewkaretydniseil
iatplqqvasgragvftqyhkkkkamtvgeyrhlanskkyqtpphqnfedlerkywknri
ynspiygadisgslfdentkqwnlghlgtiqdllekecgvviegvntpylyfgmwkttfa
whtedmdlysinylhlgepktwyvvppehgqrlerlarelfpgssrgcgaflrhkvalis
ptvlkengipfnritqeagefmvtfpygyhagfnhgfncaeainfatprwidygkmasqc
scgearvtfsmdafvrilqperydlwkrgq