PDB entry 5esv
View 5esv on RCSB PDB site
Description: Crystal Structure of Broadly Neutralizing Antibody CH03, Isolated from Donor CH0219, in Complex with Scaffolded Trimeric HIV-1 Env V1V2 Domain from the Clade C Superinfecting Strain of Donor CAP256.
Class: immune system
Keywords: HIV-1, Env, V1V2, CH0219, CHAVI, scaffold, CAP256, IMMUNE SYSTEM
Deposited on
2015-11-17, released
2015-12-16
The last revision prior to the SCOPe 2.05 freeze date was dated
2016-01-13, with a file datestamp of
2016-01-08.
Experiment type: XRAY
Resolution: 3.11 Å
R-factor: N/A
AEROSPACI score: 0.12
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: CH03 Heavy Chain
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- PDB 5ESV (0-121)
- Uniprot S6BGE0 (122-End)
- Chain 'B':
Compound: CH03 Light Chain
Species: Homo sapiens [TaxId:9606]
Gene: IGKC
Database cross-references and differences (RAF-indexed):
- PDB 5ESV (0-108)
- Uniprot P01834 (109-End)
Domains in SCOPe 2.05: d5esvb1, d5esvb2 - Chain 'C':
Compound: CH03 Heavy Chain
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- PDB 5ESV (0-121)
- Uniprot S6BGE0 (122-End)
- Chain 'D':
Compound: CH03 Light Chain
Species: Homo sapiens [TaxId:9606]
Gene: IGKC
Database cross-references and differences (RAF-indexed):
- PDB 5ESV (0-108)
- Uniprot P01834 (109-End)
Domains in SCOPe 2.05: d5esvd1, d5esvd2 - Chain 'E':
Compound: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase,Envelope glycoprotein gp160
Species: Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) [TaxId:71421]
Gene: ispF, HI_0671
Database cross-references and differences (RAF-indexed):
- Uniprot P44815 (2-13)
- expression tag (0-1)
- linker (14)
- Uniprot W6ICC0 (15-84)
- Uniprot P44815 (89-203)
- Chain 'F':
Compound: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase,Envelope glycoprotein gp160
Species: Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) [TaxId:71421]
Gene: ispF, HI_0671
Database cross-references and differences (RAF-indexed):
- Uniprot P44815 (2-13)
- expression tag (1)
- linker (14)
- Uniprot W6ICC0 (15-84)
- Uniprot P44815 (89-203)
- Chain 'G':
Compound: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase,Envelope glycoprotein gp160
Species: Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) [TaxId:71421]
Gene: ispF, HI_0671
Database cross-references and differences (RAF-indexed):
- Uniprot P44815 (2-13)
- expression tag (0-1)
- linker (14)
- Uniprot W6ICC0 (15-84)
- Uniprot P44815 (89-203)
- Chain 'H':
Compound: CH03 Heavy Chain
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- PDB 5ESV (0-121)
- Uniprot S6BGE0 (122-End)
- Chain 'L':
Compound: CH03 Light Chain
Species: Homo sapiens [TaxId:9606]
Gene: IGKC
Database cross-references and differences (RAF-indexed):
- PDB 5ESV (0-108)
- Uniprot P01834 (109-End)
Domains in SCOPe 2.05: d5esvl1, d5esvl2 - Heterogens: NAG, BMA, MAN, ZN, HOH
PDB Chain Sequences:
- Chain 'A':
No sequence available.
- Chain 'B':
Sequence, based on SEQRES records: (download)
>5esvB (B:)
eivltqspatlslspgeratlscrasqsvhpkyfawyqqkpgqsprlliysgstraagia
drfsgggsgihftltitrvepedfavyfcqqyggspytfgqgtkvelrrtvaapsvfifp
psdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstl
tlskadyekhkvyacevthqglsspvtksfnrgec
Sequence, based on observed residues (ATOM records): (download)
>5esvB (B:)
eivltqspatlslspgeratlscrasqsvhpkyfawyqqkpgqsprlliysgstraagia
drfsgggsgihftltitrvepedfavyfcqqyggspytfgqgtkvelrrtvaapsvfifp
psdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstl
tlskadyekhkvyacevthqglsspvtksfnrg
- Chain 'C':
No sequence available.
- Chain 'D':
Sequence, based on SEQRES records: (download)
>5esvD (D:)
eivltqspatlslspgeratlscrasqsvhpkyfawyqqkpgqsprlliysgstraagia
drfsgggsgihftltitrvepedfavyfcqqyggspytfgqgtkvelrrtvaapsvfifp
psdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstl
tlskadyekhkvyacevthqglsspvtksfnrgec
Sequence, based on observed residues (ATOM records): (download)
>5esvD (D:)
eivltqspatlslspgeratlscrasqsvhpkyfawyqqkpgqsprlliysgstraagia
drfsgggsgihftltitrvepedfavyfcqqyggspytfgqgtkvelrrtvaapsvfifp
psdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstl
tlskadyekhkvyacevthqglsspvtksfnrge
- Chain 'E':
No sequence available.
- Chain 'F':
No sequence available.
- Chain 'G':
No sequence available.
- Chain 'H':
No sequence available.
- Chain 'L':
Sequence, based on SEQRES records: (download)
>5esvL (L:)
eivltqspatlslspgeratlscrasqsvhpkyfawyqqkpgqsprlliysgstraagia
drfsgggsgihftltitrvepedfavyfcqqyggspytfgqgtkvelrrtvaapsvfifp
psdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstl
tlskadyekhkvyacevthqglsspvtksfnrgec
Sequence, based on observed residues (ATOM records): (download)
>5esvL (L:)
eivltqspatlslspgeratlscrasqsvhpkyfawyqqkpgqsprlliysgstraagia
drfsgggsgihftltitrvepedfavyfcqqyggspytfgqgtkvelrrtvaapsvfifp
psdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstl
tlskadyekhkvyacevthqglsspvtksfnrge