PDB entry 5dym
View 5dym on RCSB PDB site
Description: Crystal structure of a PadR family transcription regulator from hypervirulent Clostridium difficile R20291 - CdPadR_0991 to 1.89 Angstrom resolution
Class: DNA binding protein
Keywords: PadR, wHTH DNA binding domain, Helix turn helix motifs, transcription regulator, PadR-s2, DNA BINDING PROTEIN
Deposited on
2015-09-24, released
2016-10-05
The last revision prior to the SCOPe 2.08 freeze date was dated
2016-10-19, with a file datestamp of
2016-10-14.
Experiment type: XRAY
Resolution: 1.89 Å
R-factor: N/A
AEROSPACI score: 0.35
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: PadR-family transcriptional regulator
Species: Peptoclostridium difficile (strain R20291) [TaxId:645463]
Gene: CDR20291_0991
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d5dyma_ - Heterogens: HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>5dymA (A:)
wshpqfekmqlnkevlkgyidilivsilekkdcygyeiakqvrersefelkegtmylalk
rmesknliksyysneqssggrrkyynltnegkdfleikkqewrfikkvmnqflgevd
Sequence, based on observed residues (ATOM records): (download)
>5dymA (A:)
gyidilivsilekkdcygyeiakqvrerseflkegtmylalkrmesknliksyysneqss
ggrrkyynltnegkdfleikkqewrfikkvmnqflg