PDB entry 5dp4

View 5dp4 on RCSB PDB site
Description: Crystal Structure of EV71 3C Proteinase in complex with compound 3
Class: hydrolase/hydrolase inhibitor
Keywords: Hand, foot and mouth disease, 3C proteinase, peptidomimetics, drug design, rupintrivir, HYDROLASE-HYDROLASE INHIBITOR complex
Deposited on 2015-09-12, released 2016-03-30
The last revision prior to the SCOPe 2.08 freeze date was dated 2016-04-06, with a file datestamp of 2016-04-01.
Experiment type: XRAY
Resolution: 2.21 Å
R-factor: N/A
AEROSPACI score: 0.25 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: 3C proteinase
    Species: ENTEROVIRUS A71 [TaxId:39054]
    Database cross-references and differences (RAF-indexed):
    • Uniprot A9XG43 (1-End)
      • expression tag (0)
    Domains in SCOPe 2.08: d5dp4a1, d5dp4a2
  • Chain 'B':
    Compound: 3C proteinase
    Species: ENTEROVIRUS A71 [TaxId:39054]
    Database cross-references and differences (RAF-indexed):
    • Uniprot A9XG43 (1-End)
      • expression tag (0)
    Domains in SCOPe 2.08: d5dp4b1, d5dp4b2
  • Chain 'C':
    Compound: 3C proteinase
    Species: ENTEROVIRUS A71 [TaxId:39054]
    Database cross-references and differences (RAF-indexed):
    • Uniprot A9XG43 (1-End)
      • expression tag (0)
    Domains in SCOPe 2.08: d5dp4c1, d5dp4c2
  • Chain 'D':
    Compound: 3C proteinase
    Species: ENTEROVIRUS A71 [TaxId:39054]
    Database cross-references and differences (RAF-indexed):
    • Uniprot A9XG43 (1-End)
      • expression tag (0)
    Domains in SCOPe 2.08: d5dp4d1, d5dp4d2
  • Heterogens: 5E8, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >5dp4A (A:)
    mgpsldfalsllrrnvrqvqtdqghftmlgvrdrlavlprhsqpgktiwiehklvnilda
    velvdeqgvnleltlitldtnekfrditkfipenistasdatlvintehmpsmfvpvgdv
    vqygflnlsgkpthrtmmynfptkagqcggvvtsvgkvigihiggngrqgfcaglkrsyf
    aseqlehhhhhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >5dp4A (A:)
    mgpsldfalsllrrnvrqvqtdqghftmlgvrdrlavlprhsqpgktiwiehklvnilda
    velvdeqgvnleltlitldtnekfrditkfipenistasdatlvintehmpsmfvpvgdv
    vqygflnlsgkpthrtmmynfptkagqcggvvtsvgkvigihiggngrqgfcaglkrsyf
    a
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >5dp4B (B:)
    mgpsldfalsllrrnvrqvqtdqghftmlgvrdrlavlprhsqpgktiwiehklvnilda
    velvdeqgvnleltlitldtnekfrditkfipenistasdatlvintehmpsmfvpvgdv
    vqygflnlsgkpthrtmmynfptkagqcggvvtsvgkvigihiggngrqgfcaglkrsyf
    aseqlehhhhhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >5dp4B (B:)
    mgpsldfalsllrrnvrqvqtdqghftmlgvrdrlavlprhsqpgktiwiehklvnilda
    velvdeqgvnleltlitldtnekfrditkfipenistasdatlvintehmpsmfvpvgdv
    vqygflnlsgkpthrtmmynfptkagqcggvvtsvgkvigihiggngrqgfcaglkrsyf
    a
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >5dp4C (C:)
    mgpsldfalsllrrnvrqvqtdqghftmlgvrdrlavlprhsqpgktiwiehklvnilda
    velvdeqgvnleltlitldtnekfrditkfipenistasdatlvintehmpsmfvpvgdv
    vqygflnlsgkpthrtmmynfptkagqcggvvtsvgkvigihiggngrqgfcaglkrsyf
    aseqlehhhhhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >5dp4C (C:)
    mgpsldfalsllrrnvrqvqtdqghftmlgvrdrlavlprhsqpgktiwiehklvnilda
    velvdeqgvnleltlitldtnekfrditkfipenistasdatlvintehmpsmfvpvgdv
    vqygflnlsgkpthrtmmynfptkagqcggvvtsvgkvigihiggngrqgfcaglkrsyf
    a
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >5dp4D (D:)
    mgpsldfalsllrrnvrqvqtdqghftmlgvrdrlavlprhsqpgktiwiehklvnilda
    velvdeqgvnleltlitldtnekfrditkfipenistasdatlvintehmpsmfvpvgdv
    vqygflnlsgkpthrtmmynfptkagqcggvvtsvgkvigihiggngrqgfcaglkrsyf
    aseqlehhhhhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >5dp4D (D:)
    mgpsldfalsllrrnvrqvqtdqghftmlgvrdrlavlprhsqpgktiwiehklvnilda
    velvdeqgvnleltlitldtnekfrditkfipenistasdatlvintehmpsmfvpvgdv
    vqygflnlsgkpthrtmmynfptkagqcggvvtsvgkvigihiggngrqgfcaglkrsyf
    a