PDB entry 5dep
View 5dep on RCSB PDB site
Description: Structure of Pseudomonas aeruginosa LpxA in complex with UDP-GlcNAc
Class: transferase
Keywords: Acyltransferase Catalytic Domain, Fatty Acids, Lipid A, Substrate Specificity, Uridine Diphosphate N-Acetylglucosamine, Hydrocarbon Rulers, TRANSFERASE
Deposited on
2015-08-25, released
2015-09-16
The last revision prior to the SCOPe 2.08 freeze date was dated
2017-11-22, with a file datestamp of
2017-11-17.
Experiment type: XRAY
Resolution: 2.16 Å
R-factor: N/A
AEROSPACI score: 0.27
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: acyl-[acyl-carrier-protein]--udp-n-acetylglucosamine o-acyltransferase
Species: Pseudomonas aeruginosa (strain PA7) [TaxId:381754]
Gene: lpxA, PSPA7_1495
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d5depa_ - Chain 'B':
Compound: acyl-[acyl-carrier-protein]--udp-n-acetylglucosamine o-acyltransferase
Species: Pseudomonas aeruginosa (strain PA7) [TaxId:381754]
Gene: lpxA, PSPA7_1495
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d5depb_ - Chain 'C':
Compound: acyl-[acyl-carrier-protein]--udp-n-acetylglucosamine o-acyltransferase
Species: Pseudomonas aeruginosa (strain PA7) [TaxId:381754]
Gene: lpxA, PSPA7_1495
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d5depc_ - Chain 'D':
Compound: acyl-[acyl-carrier-protein]--udp-n-acetylglucosamine o-acyltransferase
Species: Pseudomonas aeruginosa (strain PA7) [TaxId:381754]
Gene: lpxA, PSPA7_1495
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d5depd_ - Chain 'E':
Compound: acyl-[acyl-carrier-protein]--udp-n-acetylglucosamine o-acyltransferase
Species: Pseudomonas aeruginosa (strain PA7) [TaxId:381754]
Gene: lpxA, PSPA7_1495
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d5depe_ - Chain 'F':
Compound: acyl-[acyl-carrier-protein]--udp-n-acetylglucosamine o-acyltransferase
Species: Pseudomonas aeruginosa (strain PA7) [TaxId:381754]
Gene: lpxA, PSPA7_1495
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d5depf_ - Heterogens: PO4, UD1, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence; same for both SEQRES and ATOM records: (download)
>5depA (A:)
mslidpraiidpsarlaadvqvgpwsivgaeveigegtvigphvvlkgptkigkhnriyq
fssvgedtpdlkykgeptrlvigdhnviregvtihrgtvqdraettigdhnlimayahig
hdsvignhcilvnntalaghvhvddwailsgytlvhqycrigahsfsgmgsaigkdvpay
vtvfgnpaearsmnfegmrrrgfsseaihalrraykvvyrqghtveealaelaesaaqfp
evavfrdsiqsatrgitr
- Chain 'B':
Sequence, based on SEQRES records: (download)
>5depB (B:)
mslidpraiidpsarlaadvqvgpwsivgaeveigegtvigphvvlkgptkigkhnriyq
fssvgedtpdlkykgeptrlvigdhnviregvtihrgtvqdraettigdhnlimayahig
hdsvignhcilvnntalaghvhvddwailsgytlvhqycrigahsfsgmgsaigkdvpay
vtvfgnpaearsmnfegmrrrgfsseaihalrraykvvyrqghtveealaelaesaaqfp
evavfrdsiqsatrgitr
Sequence, based on observed residues (ATOM records): (download)
>5depB (B:)
slidpraiidpsarlaadvqvgpwsivgaeveigegtvigphvvlkgptkigkhnriyqf
ssvgedtpdlkykgeptrlvigdhnviregvtihrgtvqdraettigdhnlimayahigh
dsvignhcilvnntalaghvhvddwailsgytlvhqycrigahsfsgmgsaigkdvpayv
tvfgnpaearsmnfegmrrrgfsseaihalrraykvvyrqghtveealaelaesaaqfpe
vavfrdsiqsatrgitr
- Chain 'C':
Sequence, based on SEQRES records: (download)
>5depC (C:)
mslidpraiidpsarlaadvqvgpwsivgaeveigegtvigphvvlkgptkigkhnriyq
fssvgedtpdlkykgeptrlvigdhnviregvtihrgtvqdraettigdhnlimayahig
hdsvignhcilvnntalaghvhvddwailsgytlvhqycrigahsfsgmgsaigkdvpay
vtvfgnpaearsmnfegmrrrgfsseaihalrraykvvyrqghtveealaelaesaaqfp
evavfrdsiqsatrgitr
Sequence, based on observed residues (ATOM records): (download)
>5depC (C:)
lidpraiidpsarlaadvqvgpwsivgaeveigegtvigphvvlkgptkigkhnriyqfs
svgedtpdlkykgeptrlvigdhnviregvtihrgtvqdraettigdhnlimayahighd
svignhcilvnntalaghvhvddwailsgytlvhqycrigahsfsgmgsaigkdvpayvt
vfgnpaearsmnfegmrrrgfsseaihalrraykvvyrqghtveealaelaesaaqfpev
avfrdsiqsatrgitr
- Chain 'D':
Sequence; same for both SEQRES and ATOM records: (download)
>5depD (D:)
mslidpraiidpsarlaadvqvgpwsivgaeveigegtvigphvvlkgptkigkhnriyq
fssvgedtpdlkykgeptrlvigdhnviregvtihrgtvqdraettigdhnlimayahig
hdsvignhcilvnntalaghvhvddwailsgytlvhqycrigahsfsgmgsaigkdvpay
vtvfgnpaearsmnfegmrrrgfsseaihalrraykvvyrqghtveealaelaesaaqfp
evavfrdsiqsatrgitr
- Chain 'E':
Sequence, based on SEQRES records: (download)
>5depE (E:)
mslidpraiidpsarlaadvqvgpwsivgaeveigegtvigphvvlkgptkigkhnriyq
fssvgedtpdlkykgeptrlvigdhnviregvtihrgtvqdraettigdhnlimayahig
hdsvignhcilvnntalaghvhvddwailsgytlvhqycrigahsfsgmgsaigkdvpay
vtvfgnpaearsmnfegmrrrgfsseaihalrraykvvyrqghtveealaelaesaaqfp
evavfrdsiqsatrgitr
Sequence, based on observed residues (ATOM records): (download)
>5depE (E:)
slidpraiidpsarlaadvqvgpwsivgaeveigegtvigphvvlkgptkigkhnriyqf
ssvgedtpdlkykgeptrlvigdhnviregvtihrgtvqdraettigdhnlimayahigh
dsvignhcilvnntalaghvhvddwailsgytlvhqycrigahsfsgmgsaigkdvpayv
tvfgnpaearsmnfegmrrrgfsseaihalrraykvvyrqghtveealaelaesaaqfpe
vavfrdsiqsatrgitr
- Chain 'F':
Sequence, based on SEQRES records: (download)
>5depF (F:)
mslidpraiidpsarlaadvqvgpwsivgaeveigegtvigphvvlkgptkigkhnriyq
fssvgedtpdlkykgeptrlvigdhnviregvtihrgtvqdraettigdhnlimayahig
hdsvignhcilvnntalaghvhvddwailsgytlvhqycrigahsfsgmgsaigkdvpay
vtvfgnpaearsmnfegmrrrgfsseaihalrraykvvyrqghtveealaelaesaaqfp
evavfrdsiqsatrgitr
Sequence, based on observed residues (ATOM records): (download)
>5depF (F:)
lidpraiidpsarlaadvqvgpwsivgaeveigegtvigphvvlkgptkigkhnriyqfs
svgedtpdlkykgeptrlvigdhnviregvtihrgtvqdraettigdhnlimayahighd
svignhcilvnntalaghvhvddwailsgytlvhqycrigahsfsgmgsaigkdvpayvt
vfgnpaearsmnfegmrrrgfsseaihalrraykvvyrqghtveealaelaesaaqfpev
avfrdsiqsatrgitr