PDB entry 5dd6

View 5dd6 on RCSB PDB site
Description: Crystal structures in an anti-HIV antibody lineage from immunization of Rhesus macaques
Class: immune system
Keywords: HIV HIV-1 gp41 MPER antibody, IMMUNE SYSTEM
Deposited on 2015-08-24, released 2016-05-11
The last revision prior to the SCOPe 2.08 freeze date was dated 2019-12-11, with a file datestamp of 2019-12-06.
Experiment type: XRAY
Resolution: 1.7 Å
R-factor: N/A
AEROSPACI score: 0.4 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: ANTI-HIV ANTIBODY DH570.mut58 FAB HEAVY CHAIN
    Species: MACACA MULATTA [TaxId:9544]
    Database cross-references and differences (RAF-indexed):
    • PDB 5DD6 (0-End)
    Domains in SCOPe 2.08: d5dd6a1, d5dd6a2
  • Chain 'B':
    Compound: ANTI-HIV ANTIBODY DH570.mut58 FAB LIGHT CHAIN
    Species: MACACA MULATTA [TaxId:9544]
    Database cross-references and differences (RAF-indexed):
    • PDB 5DD6 (0-End)
    Domains in SCOPe 2.08: d5dd6b1, d5dd6b2
  • Chain 'H':
    Compound: ANTI-HIV ANTIBODY DH570.mut58 FAB HEAVY CHAIN
    Species: MACACA MULATTA [TaxId:9544]
    Database cross-references and differences (RAF-indexed):
    • PDB 5DD6 (0-End)
    Domains in SCOPe 2.08: d5dd6h1, d5dd6h2
  • Chain 'L':
    Compound: ANTI-HIV ANTIBODY DH570.mut58 FAB LIGHT CHAIN
    Species: MACACA MULATTA [TaxId:9544]
    Database cross-references and differences (RAF-indexed):
    • PDB 5DD6 (0-End)
    Domains in SCOPe 2.08: d5dd6l1, d5dd6l2
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5dd6A (A:)
qvqlqesgpglvkpsetlsvtcavsgvsfssfwwgwirqspgkglewigtiygssgrgey
npslksrttisrdtsksqisleltsvtaadtaiyycsrglfqpagftftltsywfdvwgp
gvpvtvssastkgpsvfplapssrstsestaalgclvkdyfpepvtvswnsgsltsgvht
fpavlqssglyslssvvtvpssslgtqtyvcnvnhkpsntkvdkrveiktcgg

    Sequence, based on observed residues (ATOM records): (download) 
    >5dd6A (A:)
qvqlqesgpglvkpsetlsvtcavsgvsfssfwwgwirqspgkglewigtiygssgrgey
npslksrttisrdtsksqisleltsvtaadtaiyycsrglfqpaftltsywfdvwgpgvp
vtvssastkgpsvfplapstaalgclvkdyfpepvtvswnsgsltsgvhtfpavlqssgl
yslssvvtvpsstyvcnvnhkpsntkvdkrvei

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5dd6B (B:)
diqvtqspsslsasvgdtvtiscrtsqsistwlawyqvkpgkapklliytasslasgvps
rfsgsgsgtdftltisslqsedfatyycqqyislpptfglgtkveikravaapsvfifpp
sedqvksgtvsvvcllnnfypreasvkwkvdgvlktgnsqesvteqdskdntyslsstlt
lsntdyqshnvyacevthqglsspvtksfnrgec

    Sequence, based on observed residues (ATOM records): (download) 
    >5dd6B (B:)
diqvtqspsslsasvgdtvtiscrtsqsistwlawyqvkpgkapklliytasslasgvps
rfsgsgsgtdftltisslqsedfatyycqqyislpptfglgtkveikravaapsvfifpp
sedqvksgtvsvvcllnnfypreasvkwkvdgvlktgnsqesvteqdskdntyslsstlt
lsntdyqshnvyacevthqglsspvtksfnrge

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >5dd6H (H:)
qvqlqesgpglvkpsetlsvtcavsgvsfssfwwgwirqspgkglewigtiygssgrgey
npslksrttisrdtsksqisleltsvtaadtaiyycsrglfqpagftftltsywfdvwgp
gvpvtvssastkgpsvfplapssrstsestaalgclvkdyfpepvtvswnsgsltsgvht
fpavlqssglyslssvvtvpssslgtqtyvcnvnhkpsntkvdkrveiktcgg

    Sequence, based on observed residues (ATOM records): (download) 
    >5dd6H (H:)
qvqlqesgpglvkpsetlsvtcavsgvsfssfwwgwirqspgkglewigtiygssgrgey
npslksrttisrdtsksqisleltsvtaadtaiyycsrglfqpatltsywfdvwgpgvpv
tvssastkgpsvfplapestaalgclvkdyfpepvtvswnsgsltsgvhtfpavlqssgl
yslssvvtvpssslgtqtyvcnvnhkpsntkvdkrveik

  • Chain 'L':
    Sequence, based on SEQRES records: (download) 
    >5dd6L (L:)
diqvtqspsslsasvgdtvtiscrtsqsistwlawyqvkpgkapklliytasslasgvps
rfsgsgsgtdftltisslqsedfatyycqqyislpptfglgtkveikravaapsvfifpp
sedqvksgtvsvvcllnnfypreasvkwkvdgvlktgnsqesvteqdskdntyslsstlt
lsntdyqshnvyacevthqglsspvtksfnrgec

    Sequence, based on observed residues (ATOM records): (download) 
    >5dd6L (L:)
diqvtqspsslsasvgdtvtiscrtsqsistwlawyqvkpgkapklliytasslasgvps
rfsgsgsgtdftltisslqsedfatyycqqyislpptfglgtkveikravaapsvfifpp
sedqvksgtvsvvcllnnfypreasvkwkvdgvlktgnsqesvteqdskdntyslsstlt
lsntdyqshnvyacevthqglsspvtksfnrge