PDB entry 5dck

View 5dck on RCSB PDB site
Description: Crystal Structure of FIV Capsid C-Terminal Domain
Class: viral protein
Keywords: Retrovirus, FIV, Capsid, viral protein
Deposited on 2015-08-24, released 2016-04-20
The last revision prior to the SCOPe 2.08 freeze date was dated 2016-07-20, with a file datestamp of 2016-07-15.
Experiment type: XRAY
Resolution: 2.29 Å
R-factor: N/A
AEROSPACI score: 0.25 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Capsid C-Terminal Domain
    Species: Feline immunodeficiency virus (isolate Petaluma) [TaxId:11674]
    Gene: GAG
    Database cross-references and differences (RAF-indexed):
    • Uniprot P16087 (2-End)
      • expression tag (0-1)
    Domains in SCOPe 2.08: d5dcka1, d5dcka2
  • Chain 'B':
    Compound: Capsid C-Terminal Domain
    Species: Feline immunodeficiency virus (isolate Petaluma) [TaxId:11674]
    Gene: GAG
    Database cross-references and differences (RAF-indexed):
    • Uniprot P16087 (2-71)
      • expression tag (0-1)
    Domains in SCOPe 2.08: d5dckb1, d5dckb2
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >5dckA (A:)
    hmvqlrqgakedyssfidrlfaqidqeqntaevklylkqslsiananadckkamshlkpe
    stleeklracqe
    

    Sequence, based on observed residues (ATOM records): (download)
    >5dckA (A:)
    hmvqlrqgakedyssfidrlfaqidqeqntaevklylkqslsiananadckkamshlkpe
    stleeklracq
    

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download)
    >5dckB (B:)
    hmvqlrqgakedyssfidrlfaqidqeqntaevklylkqslsiananadckkamshlkpe
    stleeklracqe