PDB entry 5d9p

View 5d9p on RCSB PDB site
Description: Crystal structure of PbGH5A, a glycoside hydrolase family 5 enzyme from Prevotella bryantii B14, in complex with an inhibitory N-bromoacetylglycosylamine derivative of XXXG
Class: hydrolase
Keywords: endo-beta-glucanase/endo-xyloglucanase, GLYCOSYL HYDROLASE FAMILY 5, MIXED ALPHA-BETA, TIM BARREL, HYDROLASE
Deposited on 2015-08-18, released 2015-11-04
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-07-29, with a file datestamp of 2020-07-10.
Experiment type: XRAY
Resolution: 1.8 Å
R-factor: N/A
AEROSPACI score: 0.45 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: B-1,4-endoglucanase
    Species: Prevotella bryantii [TaxId:77095]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5d9pa_
  • Chain 'B':
    Compound: B-1,4-endoglucanase
    Species: Prevotella bryantii [TaxId:77095]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5d9pb_
  • Heterogens: CA, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5d9pA (A:)
minqnatymeesaqsavdnfglgfnlgntldangcgtgkpvatyetfwgqpettqdmmtf
lmqngfnavripvtwyehmdaegnvdeawmmrvkaiveyamnaglyaivnvhhdtaagsg
awikadtdvyaatkekfkklwtqianaladydqhllfegynemldgnnswdepqkasgye
alnnyaqdfvdavratggnnatrnlivntyaaakgenvlnnfmlptdavnnhlivqvhsy
dpwnffntkttwdsechntlteifsalskkfttipyiigeygthgesdisvsksspaeki
klaadqaadmvklakdhhsatfywmsifdgsdriqpqwslptvveamqeaynn

    Sequence, based on observed residues (ATOM records): (download) 
    >5d9pA (A:)
atymeesaqsavdnfglgfnlgntldangcgtgkpvatyetfwgqpettqdmmtflmqng
fnavripvtwyehmdaegnvdeawmmrvkaiveyamnaglyaivnvhhdtaagsgawika
dtdvyaatkekfkklwtqianaladydqhllfegynemldgnnswdepqkasgyealnny
aqdfvdavratggnnatrnlivntyaaakgenvlnnfmlptdavnnhlivqvhsydpwnf
fntkttwdsechntlteifsalskkfttipyiigeygthgesdisvsksspaekiklaad
qaadmvklakdhhsatfywmsifdgsdriqpqwslptvveamqeayn

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5d9pB (B:)
minqnatymeesaqsavdnfglgfnlgntldangcgtgkpvatyetfwgqpettqdmmtf
lmqngfnavripvtwyehmdaegnvdeawmmrvkaiveyamnaglyaivnvhhdtaagsg
awikadtdvyaatkekfkklwtqianaladydqhllfegynemldgnnswdepqkasgye
alnnyaqdfvdavratggnnatrnlivntyaaakgenvlnnfmlptdavnnhlivqvhsy
dpwnffntkttwdsechntlteifsalskkfttipyiigeygthgesdisvsksspaeki
klaadqaadmvklakdhhsatfywmsifdgsdriqpqwslptvveamqeaynn

    Sequence, based on observed residues (ATOM records): (download) 
    >5d9pB (B:)
tymeesaqsavdnfglgfnlgntldangcgtgkpvatyetfwgqpettqdmmtflmqngf
navripvtwyehmdaegnvdeawmmrvkaiveyamnaglyaivnvhhdtaagsgawikad
tdvyaatkekfkklwtqianaladydqhllfegynemldgnnswdepqkasgyealnnya
qdfvdavratggnnatrnlivntyaaakgenvlnnfmlptdavnnhlivqvhsydpwnff
ntkttwdsechntlteifsalskkfttipyiigeygthgesdisvsksspaekiklaadq
aadmvklakdhhsatfywmsifdgsdriqpqwslptvveamqeaynn