PDB entry 5d9m

View 5d9m on RCSB PDB site
Description: Crystal structure of PbGH5A, a glycoside hydrolase family 5 enzyme from Prevotella bryantii B14, E280A mutant in complex with the xyloglucan tetradecasaccharide XXXGXXXG
Class: hydrolase
Keywords: endo-beta-glucanase/endo-xyloglucanase, GLYCOSYL HYDROLASE FAMILY 5, MIXED ALPHA-BETA, TIM BARREL, HYDROLASE
Deposited on 2015-08-18, released 2015-11-04
The last revision prior to the SCOPe 2.05 freeze date was dated 2015-11-04, with a file datestamp of 2015-10-30.
Experiment type: XRAY
Resolution: 1.9 Å
R-factor: N/A
AEROSPACI score: 0.34 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: B-1,4-endoglucanase
    Species: Prevotella bryantii [TaxId:77095]
    Database cross-references and differences (RAF-indexed):
    • Uniprot O06842
      • engineered mutation (279)
    Domains in SCOPe 2.05: d5d9ma_
  • Chain 'B':
    Compound: B-1,4-endoglucanase
    Species: Prevotella bryantii [TaxId:77095]
    Database cross-references and differences (RAF-indexed):
    • Uniprot O06842 (Start-352)
      • engineered mutation (279)
    Domains in SCOPe 2.05: d5d9mb_
  • Heterogens: GLC, BGC, XYS, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5d9mA (A:)
minqnatymeesaqsavdnfglgfnlgntldangcgtgkpvatyetfwgqpettqdmmtf
lmqngfnavripvtwyehmdaegnvdeawmmrvkaiveyamnaglyaivnvhhdtaagsg
awikadtdvyaatkekfkklwtqianaladydqhllfegynemldgnnswdepqkasgye
alnnyaqdfvdavratggnnatrnlivntyaaakgenvlnnfmlptdavnnhlivqvhsy
dpwnffntkttwdsechntlteifsalskkfttipyiigaygthgesdisvsksspaeki
klaadqaadmvklakdhhsatfywmsifdgsdriqpqwslptvveamqeaynn

    Sequence, based on observed residues (ATOM records): (download) 
    >5d9mA (A:)
tymeesaqsavdnfglgfnlgntldangcgtgkpvatyetfwgqpettqdmmtflmqngf
navripvtwyehmdaegnvdeawmmrvkaiveyamnaglyaivnvhhdtaagsgawikad
tdvyaatkekfkklwtqianaladydqhllfegynemldgnnswdepqkasgyealnnya
qdfvdavratggnnatrnlivntyaaakgenvlnnfmlptdavnnhlivqvhsydpwnff
ntkttwdsechntlteifsalskkfttipyiigaygthgesdisvsksspaekiklaadq
aadmvklakdhhsatfywmsifdgsdriqpqwslptvveamqeayn

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5d9mB (B:)
minqnatymeesaqsavdnfglgfnlgntldangcgtgkpvatyetfwgqpettqdmmtf
lmqngfnavripvtwyehmdaegnvdeawmmrvkaiveyamnaglyaivnvhhdtaagsg
awikadtdvyaatkekfkklwtqianaladydqhllfegynemldgnnswdepqkasgye
alnnyaqdfvdavratggnnatrnlivntyaaakgenvlnnfmlptdavnnhlivqvhsy
dpwnffntkttwdsechntlteifsalskkfttipyiigaygthgesdisvsksspaeki
klaadqaadmvklakdhhsatfywmsifdgsdriqpqwslptvveamqeaynn

    Sequence, based on observed residues (ATOM records): (download) 
    >5d9mB (B:)
tymeesaqsavdnfglgfnlgntldangcgtgkpvatyetfwgqpettqdmmtflmqngf
navripvtwyehmdaegnvdeawmmrvkaiveyamnaglyaivnvhhdtaagsgawikad
tdvyaatkekfkklwtqianaladydqhllfegynemldgnnswdepqkasgyealnnya
qdfvdavratggnnatrnlivntyaaakgenvlnnfmlptdavnnhlivqvhsydpwnff
ntkttwdsechntlteifsalskkfttipyiigaygthgesdisvsksspaekiklaadq
aadmvklakdhhsatfywmsifdgsdriqpqwslptvveamqeaynn