PDB entry 5d7d
View 5d7d on RCSB PDB site
Description: Crystal structure of the ATP binding domain of S. aureus GyrB complexed with a ligand
Class: isomerase/isomerase inhibitor
Keywords: DNA gyrase, GyrB, ligand, structure-based design, ISOMERASE-ISOMERASE INHIBITOR complex
Deposited on
2015-08-13, released
2015-11-11
The last revision prior to the SCOPe 2.05 freeze date was dated
2015-11-11, with a file datestamp of
2015-11-06.
Experiment type: XRAY
Resolution: 1.6 Å
R-factor: N/A
AEROSPACI score: 0.44
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: DNA gyrase subunit b
Species: Staphylococcus aureus [TaxId:1280]
Gene: GYRB
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.05: d5d7da_ - Chain 'B':
Compound: DNA gyrase subunit b
Species: Staphylococcus aureus [TaxId:1280]
Gene: GYRB
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.05: d5d7db_ - Heterogens: MPD, CL, MG, 57X, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>5d7dA (A:)
gsvtalsdvnntdnygagqiqvlegleavrkrpgmyigstserglhhlvweivdnsidea
lagyanqievviekdnwikvtdngrgipvdiqekmgrpaveviltssvvnalsqdlevyv
hrnetiyhqaykkgvpqfdlkevgttdktgtvirfkadgeiftettvynyetlqqrirel
aflnkgiqitlrderdeenvredsyhyeggik
Sequence, based on observed residues (ATOM records): (download)
>5d7dA (A:)
gagqiqvlegleavrkrpgmyigstserglhhlvweivdnsidealagyanqievviekd
nwikvtdngrgipvdiqekmgrpaveviltssvvnalsqdlevyvhrnetiyhqaykkgv
pqfdlkevgttdktgtvirfkadgeiftettvynyetlqqrirelaflnkgiqitlrder
deenvredsyhye
- Chain 'B':
Sequence, based on SEQRES records: (download)
>5d7dB (B:)
gsvtalsdvnntdnygagqiqvlegleavrkrpgmyigstserglhhlvweivdnsidea
lagyanqievviekdnwikvtdngrgipvdiqekmgrpaveviltssvvnalsqdlevyv
hrnetiyhqaykkgvpqfdlkevgttdktgtvirfkadgeiftettvynyetlqqrirel
aflnkgiqitlrderdeenvredsyhyeggik
Sequence, based on observed residues (ATOM records): (download)
>5d7dB (B:)
qvlegleavrkrpgmyigstserglhhlvweivdnsidealagyanqievviekdnwikv
tdngrgipvdiqekmgrpaveviltssvvnalsqdlevyvhrnetiyhqaykkgvpqfdl
kevgttdktgtvirfkadgeiftettvynyetlqqrirelaflnkgiqitlrderdeenv
redsyhyeg