PDB entry 5d0m

View 5d0m on RCSB PDB site
Description: Structure of UbE2D2:RNF165:Ub complex
Class: ligase
Keywords: complex, ubiquitin, LIGASE
Deposited on 2015-08-03, released 2015-12-09
The last revision prior to the SCOPe 2.06 freeze date was dated 2015-12-30, with a file datestamp of 2015-12-24.
Experiment type: XRAY
Resolution: 1.91 Å
R-factor: N/A
AEROSPACI score: 0.34 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: ubiquitin-conjugating enzyme e2 d2
    Species: Homo sapiens [TaxId:9606]
    Gene: UBE2D2, PUBC1, UBC4, UBC5B, UBCH4, UBCH5B
    Database cross-references and differences (RAF-indexed):
    • Uniprot P62837 (5-151)
      • engineered mutation (25-26)
      • engineered mutation (89)
      • engineered mutation (111)
      • engineered mutation (115)
    Domains in SCOPe 2.06: d5d0ma_
  • Chain 'B':
    Compound: Polyubiquitin-B
    Species: Homo sapiens [TaxId:9606]
    Gene: UBB
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d5d0mb_
  • Chain 'C':
    Compound: RING finger protein 165
    Species: Homo sapiens [TaxId:9606]
    Gene: RNF165
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q6ZSG1
      • engineered mutation (53)
  • Heterogens: PO4, ZN, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >5d0mA (A:)
    gplgsmalkrihkelndlardppaqsragpvgddmfhwqatimgpndspyqggvffltih
    fptdypfkppkvafttriyhpninsngsikldilrsqwspaltiskvllsissllsdpnp
    ddplvpeiariyktdrekynriarewtqkyam
    

    Sequence, based on observed residues (ATOM records): (download)
    >5d0mA (A:)
    malkrihkelndlardppaqsragpvgddmfhwqatimgpndspyqggvffltihfptdy
    pfkppkvafttriyhpninsngsikldilrsqwspaltiskvllsissllsdpnpddplv
    peiariyktdrekynriarewtqkyam
    

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download)
    >5d0mB (B:)
    mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
    iqkestlhlvlrlrgg
    

  • Chain 'C':
    No sequence available.