PDB entry 5cy4

View 5cy4 on RCSB PDB site
Description: Crystal structure of an oligoribonuclease from Acinetobacter baumannii
Class: Oxidoreductase
Keywords: oxidoreductase, Structural Genomics, Seattle Structural Genomics Center for Infectious Disease, SSGCID
Deposited on 2015-07-30, released 2015-08-19
The last revision prior to the SCOPe 2.06 freeze date was dated 2015-08-19, with a file datestamp of 2015-08-14.
Experiment type: XRAY
Resolution: 2.25 Å
R-factor: N/A
AEROSPACI score: 0.27 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Oligoribonuclease
    Species: ACINETOBACTER BAUMANNII [TaxId:470]
    Gene: orn, ABUW_3367, BL01_16870, IOMTU433_3284, IX87_17160, LH92_02780, MRSN16875_02860, RQ24_13780, RQ85_08810, RU84_15800, VM83_02650, WH42_12930
    Database cross-references and differences (RAF-indexed):
    • Uniprot V5VGJ9 (8-End)
      • expression tag (7)
    Domains in SCOPe 2.06: d5cy4a1, d5cy4a2
  • Chain 'B':
    Compound: Oligoribonuclease
    Species: ACINETOBACTER BAUMANNII [TaxId:470]
    Gene: orn, ABUW_3367, BL01_16870, IOMTU433_3284, IX87_17160, LH92_02780, MRSN16875_02860, RQ24_13780, RQ85_08810, RU84_15800, VM83_02650, WH42_12930
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d5cy4b_
  • Chain 'C':
    Compound: Oligoribonuclease
    Species: ACINETOBACTER BAUMANNII [TaxId:470]
    Gene: orn, ABUW_3367, BL01_16870, IOMTU433_3284, IX87_17160, LH92_02780, MRSN16875_02860, RQ24_13780, RQ85_08810, RU84_15800, VM83_02650, WH42_12930
    Database cross-references and differences (RAF-indexed):
    • Uniprot V5VGJ9 (8-End)
      • expression tag (7)
    Domains in SCOPe 2.06: d5cy4c1, d5cy4c2
  • Chain 'D':
    Compound: Oligoribonuclease
    Species: ACINETOBACTER BAUMANNII [TaxId:470]
    Gene: orn, ABUW_3367, BL01_16870, IOMTU433_3284, IX87_17160, LH92_02780, MRSN16875_02860, RQ24_13780, RQ85_08810, RU84_15800, VM83_02650, WH42_12930
    Database cross-references and differences (RAF-indexed):
    • Uniprot V5VGJ9 (8-End)
      • expression tag (7)
    Domains in SCOPe 2.06: d5cy4d1, d5cy4d2
  • Chain 'E':
    Compound: Oligoribonuclease
    Species: ACINETOBACTER BAUMANNII [TaxId:470]
    Gene: orn, ABUW_3367, BL01_16870, IOMTU433_3284, IX87_17160, LH92_02780, MRSN16875_02860, RQ24_13780, RQ85_08810, RU84_15800, VM83_02650, WH42_12930
    Database cross-references and differences (RAF-indexed):
    • Uniprot V5VGJ9 (8-End)
      • expression tag (7)
    Domains in SCOPe 2.06: d5cy4e1, d5cy4e2
  • Chain 'F':
    Compound: Oligoribonuclease
    Species: ACINETOBACTER BAUMANNII [TaxId:470]
    Gene: orn, ABUW_3367, BL01_16870, IOMTU433_3284, IX87_17160, LH92_02780, MRSN16875_02860, RQ24_13780, RQ85_08810, RU84_15800, VM83_02650, WH42_12930
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d5cy4f_
  • Heterogens: CA, EDO, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5cy4A (A:)
mahhhhhhmsstlntrliwidlemtgldtdndqiieiatiitddhlnvlaegpvlaihqp
drilnamdewntrqhgqsgliervrrskltardaelqtleflkkwvnpkvspmcgnsicq
drrflhrlmpeleqyfhyrnldvstvkelskrwrpeimsglkknashlamddirdsisel
kyyreyffimntdgkd

    Sequence, based on observed residues (ATOM records): (download) 
    >5cy4A (A:)
hmsstlntrliwidlemtgldtdndqiieiatiitddhlnvlaegpvlaihqpdrilnam
dewntrqhgqsgliervrrskltardaelqtleflkkwvnpkvspmcgnsicqdrrflhr
lmpeleqyfhyrnldvstvkelskrwrpeimsglkashlamddirdsiselkyyreyffi
mn

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5cy4B (B:)
mahhhhhhmsstlntrliwidlemtgldtdndqiieiatiitddhlnvlaegpvlaihqp
drilnamdewntrqhgqsgliervrrskltardaelqtleflkkwvnpkvspmcgnsicq
drrflhrlmpeleqyfhyrnldvstvkelskrwrpeimsglkknashlamddirdsisel
kyyreyffimntdgkd

    Sequence, based on observed residues (ATOM records): (download) 
    >5cy4B (B:)
sstlntrliwidlemtgldtdndqiieiatiitddhlnvlaegpvlaihqpdrilnamde
wntrqhgqsgliervrrskltardaelqtleflkkwvnpkvspmcgnsicqdrrflhrlm
peleqyfhyrnldvstvkelskrwrpeimsglhlamddirdsiselkyyreyffimn

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >5cy4C (C:)
mahhhhhhmsstlntrliwidlemtgldtdndqiieiatiitddhlnvlaegpvlaihqp
drilnamdewntrqhgqsgliervrrskltardaelqtleflkkwvnpkvspmcgnsicq
drrflhrlmpeleqyfhyrnldvstvkelskrwrpeimsglkknashlamddirdsisel
kyyreyffimntdgkd

    Sequence, based on observed residues (ATOM records): (download) 
    >5cy4C (C:)
hmsstlntrliwidlemtgldtdndqiieiatiitddhlnvlaegpvlaihqpdrilnam
dewntrqhgqsgliervrrskltardaelqtleflkkwvnpkvspmcgnsicqdrrflhr
lmpeleqyfhyrnldvstvkelskrwrpeimsglkknshlamddirdsiselkyyreyff
imnt

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >5cy4D (D:)
mahhhhhhmsstlntrliwidlemtgldtdndqiieiatiitddhlnvlaegpvlaihqp
drilnamdewntrqhgqsgliervrrskltardaelqtleflkkwvnpkvspmcgnsicq
drrflhrlmpeleqyfhyrnldvstvkelskrwrpeimsglkknashlamddirdsisel
kyyreyffimntdgkd

    Sequence, based on observed residues (ATOM records): (download) 
    >5cy4D (D:)
hmsstlntrliwidlemtgldtdndqiieiatiitddhlnvlaegpvlaihqpdrilnam
dewntrqhgqsgliervrrskltardaelqtleflkkwvnpkvspmcgnsicqdrrflhr
lmpeleqyfhyrnldvstvkelskrwrpeimsglkknashlamddirdsiselkyyreyf
fimn

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >5cy4E (E:)
mahhhhhhmsstlntrliwidlemtgldtdndqiieiatiitddhlnvlaegpvlaihqp
drilnamdewntrqhgqsgliervrrskltardaelqtleflkkwvnpkvspmcgnsicq
drrflhrlmpeleqyfhyrnldvstvkelskrwrpeimsglkknashlamddirdsisel
kyyreyffimntdgkd

    Sequence, based on observed residues (ATOM records): (download) 
    >5cy4E (E:)
hmsstlntrliwidlemtgldtdndqiieiatiitddhlnvlaegpvlaihqpdrilnam
dewntrqhgqsgliervrrskltardaelqtleflkkwvnpkvspmcgnsicqdrrflhr
lmpeleqyfhyrnldvstvkelskrwrpeimsglkhlamddirdsiselkyyreyffimn

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >5cy4F (F:)
mahhhhhhmsstlntrliwidlemtgldtdndqiieiatiitddhlnvlaegpvlaihqp
drilnamdewntrqhgqsgliervrrskltardaelqtleflkkwvnpkvspmcgnsicq
drrflhrlmpeleqyfhyrnldvstvkelskrwrpeimsglkknashlamddirdsisel
kyyreyffimntdgkd

    Sequence, based on observed residues (ATOM records): (download) 
    >5cy4F (F:)
sstlntrliwidlemtgldtdndqiieiatiitddhlnvlaegpvlaihqpdrilnamde
wntrqhgqsgliervrrskltardaelqtleflkkwvnpkvspmcgnsicqdrrflhrlm
peleqyfhyrnldvstvkelskrwrpeimsglkknashlamddirdsiselkyyreyffi
mn