PDB entry 5cpw

View 5cpw on RCSB PDB site
Description: Crystal structure of murine polyomavirus PTA strain VP1 in complex with the GT1a glycan
Class: viral protein
Keywords: Murine Polyomavirus, Virus protein, carbohydrate complex, virus-host interaction, viral protein
Deposited on 2015-07-21, released 2015-10-28
The last revision prior to the SCOPe 2.05 freeze date was dated 2015-10-28, with a file datestamp of 2015-10-23.
Experiment type: XRAY
Resolution: 1.75 Å
R-factor: N/A
AEROSPACI score: 0.38 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: vp1
    Species: Murine polyomavirus [TaxId:10634]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d5cpwa_
  • Chain 'B':
    Compound: vp1
    Species: Murine polyomavirus [TaxId:10634]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d5cpwb_
  • Chain 'C':
    Compound: vp1
    Species: Murine polyomavirus [TaxId:10634]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d5cpwc_
  • Chain 'D':
    Compound: vp1
    Species: Murine polyomavirus [TaxId:10634]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d5cpwd_
  • Chain 'E':
    Compound: vp1
    Species: Murine polyomavirus [TaxId:10634]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d5cpwe_
  • Heterogens: GOL, SIA, GAL, NGA, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5cpwA (A:)
gmevldlvtgpdsvteieaflnprmgqpptpeslteggqyygwsrginlatsdtedspen
ntlptwsmaklqlpmlnedltcdtlqmweavsvktevvgsgslldvhgfnkptdtvntkg
istpvegsqyhvfavggepldlqglvtdartkykeegvvtiktitkkdmvnkdqvlnpis
kakldkdgmypveiwhpdpaknentryfgnytggtttppvlqftntlttvlldengvgpl
ckgeglylscvdimgwrvtrnydvhhwrglpryfkitlrkrwvk

    Sequence, based on observed residues (ATOM records): (download) 
    >5cpwA (A:)
gmevldlvtgpdsvteieaflnprmgqpptpeslteggqyygwsrginlatsdtedspen
ntlptwsmaklqlpmlntlqmweavsvktevvgsgslldvhgfnkptdtvntkgistpve
gsqyhvfavggepldlqglvtdartkykeegvvtiktitkkdmvnkdqvlnpiskakldk
dgmypveiwhpdpaknentryfgnytggtttppvlqftntlttvlldengvgplckgegl
ylscvdimgwrvtrnydvhhwrglpryfkitlrkrwvk

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5cpwB (B:)
gmevldlvtgpdsvteieaflnprmgqpptpeslteggqyygwsrginlatsdtedspen
ntlptwsmaklqlpmlnedltcdtlqmweavsvktevvgsgslldvhgfnkptdtvntkg
istpvegsqyhvfavggepldlqglvtdartkykeegvvtiktitkkdmvnkdqvlnpis
kakldkdgmypveiwhpdpaknentryfgnytggtttppvlqftntlttvlldengvgpl
ckgeglylscvdimgwrvtrnydvhhwrglpryfkitlrkrwvk

    Sequence, based on observed residues (ATOM records): (download) 
    >5cpwB (B:)
gmevldlvtgpdsvteieaflnprmgqpptpeslteggqyygwsrginlatsdtedspen
ntlptwsmaklqlpmlntlqmweavsvktevvgsgslldvhgfnkptdtvntkgistpve
gsqyhvfavggepldlqglvtdartkykeegvvtiktitkkdmvnkdqvlnpiskakldk
dgmypveiwhpdpaknentryfgnytggtttppvlqftntlttvlldengvgplckgegl
ylscvdimgwrvtrnydvhhwrglpryfkitlrkrwvk

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >5cpwC (C:)
gmevldlvtgpdsvteieaflnprmgqpptpeslteggqyygwsrginlatsdtedspen
ntlptwsmaklqlpmlnedltcdtlqmweavsvktevvgsgslldvhgfnkptdtvntkg
istpvegsqyhvfavggepldlqglvtdartkykeegvvtiktitkkdmvnkdqvlnpis
kakldkdgmypveiwhpdpaknentryfgnytggtttppvlqftntlttvlldengvgpl
ckgeglylscvdimgwrvtrnydvhhwrglpryfkitlrkrwvk

    Sequence, based on observed residues (ATOM records): (download) 
    >5cpwC (C:)
gmevldlvtgpdsvteieaflnprmgqpptpeslteggqyygwsrginlatsdtedspen
ntlptwsmaklqlpmlntlqmweavsvktevvgsgslldvhgfnkptdtvntkgistpve
gsqyhvfavggepldlqglvtdartkykeegvvtiktitkkdmvnkdqvlnpiskakldk
dgmypveiwhpdpaknentryfgnytggtttppvlqftntlttvlldengvgplckgegl
ylscvdimgwrvtrnydvhhwrglpryfkitlrkrwvk

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >5cpwD (D:)
gmevldlvtgpdsvteieaflnprmgqpptpeslteggqyygwsrginlatsdtedspen
ntlptwsmaklqlpmlnedltcdtlqmweavsvktevvgsgslldvhgfnkptdtvntkg
istpvegsqyhvfavggepldlqglvtdartkykeegvvtiktitkkdmvnkdqvlnpis
kakldkdgmypveiwhpdpaknentryfgnytggtttppvlqftntlttvlldengvgpl
ckgeglylscvdimgwrvtrnydvhhwrglpryfkitlrkrwvk

    Sequence, based on observed residues (ATOM records): (download) 
    >5cpwD (D:)
mevldlvtgpdsvteieaflnprmgqpptpeslteggqyygwsrginlatsdtedspenn
tlptwsmaklqlpmlnedltcdtlqmweavsvktevvgsgslldvhgfnkptdtvntkgi
stpvegsqyhvfavggepldlqglvtdartkykeegvvtiktitkkdmvnkdqvlnpisk
akldkdgmypveiwhpdpaknentryfgnytggtttppvlqftntlttvlldengvgplc
kgeglylscvdimgwrvtrnydvhhwrglpryfkitlrkrwvk

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >5cpwE (E:)
gmevldlvtgpdsvteieaflnprmgqpptpeslteggqyygwsrginlatsdtedspen
ntlptwsmaklqlpmlnedltcdtlqmweavsvktevvgsgslldvhgfnkptdtvntkg
istpvegsqyhvfavggepldlqglvtdartkykeegvvtiktitkkdmvnkdqvlnpis
kakldkdgmypveiwhpdpaknentryfgnytggtttppvlqftntlttvlldengvgpl
ckgeglylscvdimgwrvtrnydvhhwrglpryfkitlrkrwvk

    Sequence, based on observed residues (ATOM records): (download) 
    >5cpwE (E:)
gmevldlvtgpdsvteieaflnprmgqpptpeslteggqyygwsrginlatsdtedspen
ntlptwsmaklqlpmlntlqmweavsvktevvgsgslldvhgfnkptdtvntkgistpve
gsqyhvfavggepldlqglvtdartkykeegvvtiktitkkdmvnkdqvlnpiskakldk
dgmypveiwhpdpaknentryfgnytggtttppvlqftntlttvlldengvgplckgegl
ylscvdimgwrvtrnydvhhwrglpryfkitlrkrwvk