PDB entry 5c9j

View 5c9j on RCSB PDB site
Description: Human CD1c with ligands in A' and F' channel
Class: immune system
Keywords: Antigen Presentation, CD1, human CD1, MHC-like, Immunology, lipid antigen, immune system
Deposited on 2015-06-27, released 2016-03-02
The last revision prior to the SCOPe 2.07 freeze date was dated 2016-03-09, with a file datestamp of 2016-03-04.
Experiment type: XRAY
Resolution: 2.4 Å
R-factor: N/A
AEROSPACI score: 0.22 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: T-cell surface glycoprotein CD1c,T-cell surface glycoprotein CD1b
    Species: Homo sapiens [TaxId:9606]
    Gene: CD1B
    Database cross-references and differences (RAF-indexed):
    • Uniprot P29017 (0-179)
    • Uniprot P29016 (180-272)
      • expression tag (273-280)
    Domains in SCOPe 2.07: d5c9ja1, d5c9ja2, d5c9ja3
  • Chain 'B':
    Compound: Beta-2-microglobulin
    Species: Homo sapiens [TaxId:9606]
    Gene: B2M, CDABP0092, HDCMA22P
    Database cross-references and differences (RAF-indexed):
    • Uniprot P61769 (1-98)
      • initiating methionine (0)
    Domains in SCOPe 2.07: d5c9jb1, d5c9jb2
  • Heterogens: DAO, STE, GOL, PO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download)
    >5c9jA (A:)
    ehvsfhviqifsfvnqswargqgsgwldelqthgwdsesgtiiflhnwskgnfsneelsd
    lellfrfylfgltreiqdhasqdyskypfevqvkagcelhsgkspegffqvafngldlls
    fqnttwvpspgcgslaqsvchllnhqyegvtetvynlirstcprfllglldagkmyvhrq
    vkpeawlssgpspgpgrlqlvchvsgfypkpvwvmwmrgeqeqqgtqlgdilpnanwtwy
    lratldvadgeaaglscrvkhsslegqdiilywgpgsgggl
    

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download)
    >5c9jB (B:)
    miqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskd
    wsfyllyyteftptekdeyacrvnhvtlsqpkivkwdrd