PDB entry 5c7m
View 5c7m on RCSB PDB site
Description: crystal structure of e3 ligase itch with a ub variant
Class: ligase/signaling protein
Keywords: LIGASE, UBIQUITIN-PROTEIN LIGASE, UBIQUITIN VARIANT, Structural Genomics Consortium, SGC, Structural Genomics, LIGASE-SIGNALING PROTEIN complex
Deposited on
2015-06-24, released
2016-03-16
The last revision prior to the SCOPe 2.08 freeze date was dated
2016-04-20, with a file datestamp of
2016-04-15.
Experiment type: XRAY
Resolution: 3.03 Å
R-factor: N/A
AEROSPACI score: 0.14
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: E3 ubiquitin-protein ligase Itchy homolog
Species: Homo sapiens [TaxId:9606]
Gene: ITCH
Database cross-references and differences (RAF-indexed):
- Uniprot Q96J02 (Start-393)
- conflict (99)
- conflict (295)
Domains in SCOPe 2.08: d5c7ma_ - Chain 'B':
Compound: Polyubiquitin-C
Species: Homo sapiens [TaxId:9606]
Gene: UBC
Database cross-references and differences (RAF-indexed):
- Uniprot P0CG48 (0-End)
- engineered mutation (1)
- engineered mutation (3)
- engineered mutation (8)
- engineered mutation (43)
- engineered mutation (45)
- engineered mutation (47-48)
- engineered mutation (65)
- engineered mutation (67)
- engineered mutation (69)
- engineered mutation (72)
Domains in SCOPe 2.08: d5c7mb_ - Chain 'C':
Compound: Polyubiquitin-C
Species: Homo sapiens [TaxId:9606]
Gene: UBC
Database cross-references and differences (RAF-indexed):
- Uniprot P0CG48 (0-End)
- engineered mutation (1)
- engineered mutation (3)
- engineered mutation (8)
- engineered mutation (43)
- engineered mutation (45)
- engineered mutation (47-48)
- engineered mutation (65)
- engineered mutation (67)
- engineered mutation (69)
Domains in SCOPe 2.08: d5c7mc_ - Heterogens: HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>5c7mA (A:)
mhhhhhhssgrenlyfqgyvrdfkakvqyfrfwcqqlampqhikitvtrktlfedsfqqi
msfspqdlrrrlwvifpgeegldyggvarewffllshevsnpmyclfeyagkdnyclqin
pasyinpdhlkyfrfigrfiamalfhgkfidtgfslpfykrilnkpvglkdlesidpefy
nsliwvkennieecdlemyfsvdkeilgeikshdlkpnggnilvteenkeeyirmvaewr
lsrgveeqtqaffegfneilpqqylqyfdakelevllcgmqeidlndwqrhaiyrryart
skqimwfwqfvkeidnekrmrllqfvtgtcrlpvggfadlmgsngpqkfciekvgkenwl
prshtcfnrldlppyksyeqlkekllfaieeteg
Sequence, based on observed residues (ATOM records): (download)
>5c7mA (A:)
rdfkakvqyfrfwcqqlampqhikitvtrktlfedsfqqimsfspqdlrrrlwvifpgee
gldyggvarewffllshevsnpmyclfeyagkclqinpasyinpdhlkyfrfigrfiama
lfhgkfidtgfslpfykrilnkpvglkdlesidpefynsliwvkennieecdlemyfsvd
kelgeikshdlkpnggnilvteenkeeyirmvaewrlsrgveeqtqaffegfneilpqqy
lqyfdakelevllcgmqeidlndwqrhaiyrryartskqimwfwqfvkeidnekrmrllq
fvtgtcrlpvggfadlmgsngpqkfciekvgkenwlprshtcfnrldlppyksyeqlkek
llfaieeteg
- Chain 'B':
Sequence, based on SEQRES records: (download)
>5c7mB (B:)
mhilvktlrgktitlevepsdtienvkakiqdkegippdqqrllfggnkledgrtlsdyn
iqkesnlylllrrlgskfhhhhhh
Sequence, based on observed residues (ATOM records): (download)
>5c7mB (B:)
mhilvktlrgktitlevepsdtienvkakiqdkegippdqqrllfggnkledgrtlsdyn
iqkesnlylllrr
- Chain 'C':
Sequence, based on SEQRES records: (download)
>5c7mC (C:)
mhilvktlrgktitlevepsdtienvkakiqdkegippdqqrllfggnkledgrtlsdyn
iqkesnlylllrrlgskfhhhhhh
Sequence, based on observed residues (ATOM records): (download)
>5c7mC (C:)
mhilvktlrgktitlevepsdtienvkakiqdkegippdqqrllfggnkledgrtlsdyn
qkesnlylllr