PDB entry 5c7j
View 5c7j on RCSB PDB site
Description: crystal structure of nedd4 with a ub variant
Class: ligase/signaling protein
Keywords: LIGASE, UBIQUITIN-PROTEIN LIGASE, UBIQUITIN VARIANT, Structural Genomics Consortium, SGC, Structural Genomics, LIGASE-SIGNALING PROTEIN complex
Deposited on
2015-06-24, released
2016-03-16
The last revision prior to the SCOPe 2.08 freeze date was dated
2018-01-24, with a file datestamp of
2018-01-19.
Experiment type: XRAY
Resolution: 3 Å
R-factor: N/A
AEROSPACI score: 0.14
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: E3 ubiquitin-protein ligase NEDD4
Species: Homo sapiens [TaxId:9606]
Gene: NEDD4, KIAA0093, NEDD4-1, PIG53
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d5c7ja_ - Chain 'B':
Compound: E3 ubiquitin-protein ligase NEDD4
Species: Homo sapiens [TaxId:9606]
Gene: NEDD4, KIAA0093, NEDD4-1, PIG53
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d5c7jb_ - Chain 'C':
Compound: Polyubiquitin-C
Species: Homo sapiens [TaxId:9606]
Gene: UBC
Database cross-references and differences (RAF-indexed):
- Uniprot P0CG48
- expression tag (2-14)
- engineered mutation (26)
- engineered mutation (28-29)
- engineered mutation (79-81)
- engineered mutation (83)
- engineered mutation (88)
Domains in SCOPe 2.08: d5c7jc1, d5c7jc2 - Chain 'D':
Compound: Polyubiquitin-C
Species: Homo sapiens [TaxId:9606]
Gene: UBC
Database cross-references and differences (RAF-indexed):
- Uniprot P0CG48
- expression tag (2-14)
- engineered mutation (26)
- engineered mutation (28-29)
- engineered mutation (79-81)
- engineered mutation (83)
- engineered mutation (88)
Domains in SCOPe 2.08: d5c7jd1, d5c7jd2 - Heterogens: HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>5c7jA (A:)
grdykrkyeffrrklkkqndipnkfemklrratvledsyrrimgvkradflkarlwiefd
gekgldyggvarewffliskemfnpyyglfeysatdnytlqinpnsglcnedhlsyfkfi
grvagmavyhgklldgffirpfykmmlhkpitlhdmesvdseyynslrwilendpteldl
rfiideelfgqthqhelknggseivvtnknkkeyiylviqwrfvnriqkqmaafkegffe
lipqdlikifdenelellmcglgdvdvndwrehtkykngysanhqviqwfwkavlmmdse
krirllqfvtgtsrvpmngfaelygsngpqsftveqwgtpeklprahtcfnrldlppyes
feelwdklqmaientqgfdgvd
Sequence, based on observed residues (ATOM records): (download)
>5c7jA (A:)
rdykrkyeffrrklkkqndipnkfemklrratvledsyrrimgvkradflkarlwiefdg
ekgldyggvarewffliskemfnpyyglfeysatdnytlqinpnsglcnedhlsyfkfig
rvagmavyhgklldgffirpfykmmlhkpitlhdmesvdseyynslrwilendpteldlr
fiideelfgqthqhelknggseivvtnknkkeyiylviqwrfvnriqkqmaafkegffel
ipqdlikifdenelellmcglgdvdvndwrehtkykngysanhqviqwfwkavlmmdsek
rirllqfvtgtsrvpmngfaelygpqsftveqwgtpeklprahtcfnrldlppyesfeel
wdklqmaientqg
- Chain 'B':
Sequence, based on SEQRES records: (download)
>5c7jB (B:)
grdykrkyeffrrklkkqndipnkfemklrratvledsyrrimgvkradflkarlwiefd
gekgldyggvarewffliskemfnpyyglfeysatdnytlqinpnsglcnedhlsyfkfi
grvagmavyhgklldgffirpfykmmlhkpitlhdmesvdseyynslrwilendpteldl
rfiideelfgqthqhelknggseivvtnknkkeyiylviqwrfvnriqkqmaafkegffe
lipqdlikifdenelellmcglgdvdvndwrehtkykngysanhqviqwfwkavlmmdse
krirllqfvtgtsrvpmngfaelygsngpqsftveqwgtpeklprahtcfnrldlppyes
feelwdklqmaientqgfdgvd
Sequence, based on observed residues (ATOM records): (download)
>5c7jB (B:)
rdykrkyeffrrklkkqndipnkfemklrratvledsyrrimgvkradflkarlwiefdg
ekgldyggvarewffliskemfnpyyglfeysatdnytlqinpnsglcnedhlsyfkfig
rvagmavyhgklldgffirpfykmmlhkpitlhdmesvdseyynslrwilendpteldlr
fiideelfgqthqhelknggseivvtnknkkeyiylviqwrfvnriqkqmaafkegffel
ipqdlikifdenelellmcglgdvdvndwrehtkykngysanhqviqwfwkavlmmdsek
rirllqfvtgtsrvpmngfaelypqsftveqwgtpeklprahtcfnrldlppyesfeelw
dklqmaientqgf
- Chain 'C':
Sequence, based on SEQRES records: (download)
>5c7jC (C:)
ahhhhhhvtslykkagstmqifvktlagwgitlevepsdtienvkakiqdkegippdqqr
lifagkqledgrtlsdynirydsqlhlvgrlr
Sequence, based on observed residues (ATOM records): (download)
>5c7jC (C:)
hhhhhvtslykkaqifvktlagwgitlevepsdtienvkakiqdkegippdqqrlifagk
qledgrtlsdynirydsqlhlvgrl
- Chain 'D':
Sequence, based on SEQRES records: (download)
>5c7jD (D:)
ahhhhhhvtslykkagstmqifvktlagwgitlevepsdtienvkakiqdkegippdqqr
lifagkqledgrtlsdynirydsqlhlvgrlr
Sequence, based on observed residues (ATOM records): (download)
>5c7jD (D:)
hhhhhvtslykkaqifvktlagwgitlevepsdtienvkakiqdkegippdqqrlifagk
qledgrtlsdynirydsqlhlvgrl