PDB entry 5c4w

View 5c4w on RCSB PDB site
Description: Crystal structure of coxsackievirus A16
Class: virus
Keywords: HAND-FOOT-AND-MOUTH DISEASE, IMMUNOGENICITY, PICORNAVIRUS, ICOSAHEDRAL VIRUS, virus
Deposited on 2015-06-18, released 2015-08-26
The last revision prior to the SCOPe 2.06 freeze date was dated 2015-09-30, with a file datestamp of 2015-09-25.
Experiment type: XRAY
Resolution: 2.65 Å
R-factor: N/A
AEROSPACI score: 0.18 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: vp1
    Species: Coxsackievirus A16 [TaxId:31704]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d5c4wa_
  • Chain 'B':
    Compound: vp2
    Species: Coxsackievirus A16 [TaxId:31704]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d5c4wb_
  • Chain 'C':
    Compound: vp3
    Species: Coxsackievirus A16 [TaxId:31704]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d5c4wc_
  • Chain 'D':
    Compound: vp4
    Species: Coxsackievirus A16 [TaxId:31704]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: SPH, K, NA, CL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5c4wA (A:)
gdpiadmidqtvnnqvnrsltalqvlptaanteasshrlgtgvvpalqaaetgassnasd
knlietrcvlnhhstqetaignffsraglvsiitmpttgtqntdgyvnwdidlmgyaqlr
rkcelftymrfdaeftfvvakpngelvpqllqymyvppgapkptsrdsfawqtatnpsvf
vkmtdppaqvsvpfmspasayqwfydgyptfgehlqandldygqcpnnmmgtfsirtvgi
eksphsitlrvymrikhvrawiprplrnqpylfktnpnykgndikctstsrdkittl

    Sequence, based on observed residues (ATOM records): (download) 
    >5c4wA (A:)
dpiadmirsltalqvlptaanteasshrlgtgvvpalqaaetgassnasdknlietrcvl
nhhstqetaignffsraglvsiitmpttgtqntdgyvnwdidlmgyaqlrrkcelftymr
fdaeftfvvakpngelvpqllqymyvppgapkptsrdsfawqtatnpsvfvkmtdppaqv
svpfmspasayqwfydgyptfgehlqandldygqcpnnmmgtfsirtvgieksphsitlr
vymrikhvrawiprplrnqpylfktnpnykgndikctstsrdkittl

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5c4wB (B:)
spsaeacgysdrvaqltignstittqeaaniviaygewpeycpdtdatavdkptrpdvsv
nrfftldtkswakdskgwywkfpdvltevgvfgqnaqfhylyrsgfcvhvqcnaskfhqg
allvavlpeyvlgtiaggtgnenshppyattqpgqvgavlthpyvldagiplsqltvcph
qwinlrtnncatiivpymntvpfdsalnhcnfgllvipvvpldfntgatseipitvtiap
mcaefaglrqavkq

    Sequence, based on observed residues (ATOM records): (download) 
    >5c4wB (B:)
sdrvaqltignstittqeaaniviaygewpeycpdtdatavdkptrpdvsvnrfftldtk
swakdskgwywkfpdvltevgvfgqnaqfhylyrsgfcvhvqcnaskfhqgallvavlpe
yvlgtiaggtgnenshppyattqpgqvgavlthpyvldagiplsqltvcphqwinlrtnn
catiivpymntvpfdsalnhcnfgllvipvvpldfntgatseipitvtiapmcaefaglr
qavkq

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >5c4wC (C:)
giptelkpgtnqflttddgvsapilpgfhptppihipgevhnlleicrvetilevnnlkt
nettpmqrlcfpvsvqsktgelcaafradpgrdgpwqstilgqlcryytqwsgslevtfm
fagsfmatgkmliaytppggnvpadritamlgthviwdfglqssvtlvvpwisnthyrah
aragyfdyyttgiitiwyqtnyvvpigapttayivalaaaqdnftmklckdtedieqtan
iq

  • Chain 'D':
    No sequence available.