PDB entry 5c3q

View 5c3q on RCSB PDB site
Description: Crystal structure of the full-length Neurospora crassa T7H in complex with alpha-KG and thymine (T)
Class: oxidoreductase
Keywords: dioxygenase, substrate A, DSBH fold, OXIDOREDUCTASE
Deposited on 2015-06-17, released 2015-10-21
The last revision prior to the SCOPe 2.08 freeze date was dated 2015-12-02, with a file datestamp of 2015-11-27.
Experiment type: XRAY
Resolution: 2.05 Å
R-factor: N/A
AEROSPACI score: 0.3 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Thymine dioxygenase
    Species: Neurospora crassa [TaxId:5141]
    Gene: NCU06416
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q7RYZ9 (2-334)
      • expression tag (0-1)
    Domains in SCOPe 2.08: d5c3qa1, d5c3qa2
  • Chain 'B':
    Compound: Thymine dioxygenase
    Species: Neurospora crassa [TaxId:5141]
    Gene: NCU06416
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5c3qb_
  • Chain 'C':
    Compound: Thymine dioxygenase
    Species: Neurospora crassa [TaxId:5141]
    Gene: NCU06416
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5c3qc_
  • Chain 'D':
    Compound: Thymine dioxygenase
    Species: Neurospora crassa [TaxId:5141]
    Gene: NCU06416
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5c3qd_
  • Heterogens: NI, AKG, TDR, EDO, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5c3qA (A:)
gsmekaavnedglviplidfskflegdetlkletakailhgfqtagfiylknipiqpdfr
ehvfntsakffklpkekklevgwttpeanrgysapgrekvtqltdpaeiekirsaapdik
esyeigredepghpnpwpaeqddlvgfkstmnnffdqckalhievmraiavgmgidanyf
dsfvdvgdnilrllhypavksevfkinpgqvragehtdygsitllfqdsrgglqvkspng
qfidatpientvvvnagdllarwsndtikstvhrvveppkqedvhpprysiayfcnpnhk
syieaipgtyaaeserkyeginsgkylvqrlaatylehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >5c3qA (A:)
gsmekaavnedglviplidfskflegdetlkletakailhgfqtagfiylknipiqpdfr
ehvfntsakffklpkekklevgwttpeanrgysapgrekvtqltdpaeiekirsaapdik
esyeigredepghpnpwpaeqddlvgfkstmnnffdqckalhievmraiavgmgidanyf
dsfvdvgdnilrllhypavksevfkinpgqvragehtdygsitllfqdsrgglqvkspng
qfidatpientvvvnagdllarwsndtikstvhrvveppkqedvhpprysiayfcnpnhk
syieaipgtyaaeserkyeginsgkylvqrlaaty

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >5c3qB (B:)
gsmekaavnedglviplidfskflegdetlkletakailhgfqtagfiylknipiqpdfr
ehvfntsakffklpkekklevgwttpeanrgysapgrekvtqltdpaeiekirsaapdik
esyeigredepghpnpwpaeqddlvgfkstmnnffdqckalhievmraiavgmgidanyf
dsfvdvgdnilrllhypavksevfkinpgqvragehtdygsitllfqdsrgglqvkspng
qfidatpientvvvnagdllarwsndtikstvhrvveppkqedvhpprysiayfcnpnhk
syieaipgtyaaeserkyeginsgkylvqrlaatylehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >5c3qB (B:)
mekaavnedglviplidfskflegdetlkletakailhgfqtagfiylknipiqpdfreh
vfntsakffklpkekklevgwttpeanrgysappdikesyeigredepghpnpwpaeqdd
lvgfkstmnnffdqckalhievmraiavgmgidanyfdsfvdvgdnilrllhypavksev
fkinpgqvragehtdygsitllfqdsrgglqvkspngqfidatpientvvvnagdllarw
sndtikstvhrvveppkqedvhpprysiayfcnpnhksyieaipgtyaaeserkyegins
gkylvqrlaat

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >5c3qC (C:)
gsmekaavnedglviplidfskflegdetlkletakailhgfqtagfiylknipiqpdfr
ehvfntsakffklpkekklevgwttpeanrgysapgrekvtqltdpaeiekirsaapdik
esyeigredepghpnpwpaeqddlvgfkstmnnffdqckalhievmraiavgmgidanyf
dsfvdvgdnilrllhypavksevfkinpgqvragehtdygsitllfqdsrgglqvkspng
qfidatpientvvvnagdllarwsndtikstvhrvveppkqedvhpprysiayfcnpnhk
syieaipgtyaaeserkyeginsgkylvqrlaatylehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >5c3qC (C:)
mekaavnedglviplidfskflegdetlkletakailhgfqtagfiylknipiqpdfreh
vfntsakffklpkekklevgwttpeanrgysappdikesyeigredepghpnpwpaeqdd
lvgfkstmnnffdqckalhievmraiavgmgidanyfdsfvdvgdnilrllhypavksev
fkinpgqvragehtdygsitllfqdsrgglqvkspngqfidatpientvvvnagdllarw
sndtikstvhrvveppkqedvhpprysiayfcnpnhksyieaipgtyaaeserkyegins
gkylvqrlaat

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >5c3qD (D:)
gsmekaavnedglviplidfskflegdetlkletakailhgfqtagfiylknipiqpdfr
ehvfntsakffklpkekklevgwttpeanrgysapgrekvtqltdpaeiekirsaapdik
esyeigredepghpnpwpaeqddlvgfkstmnnffdqckalhievmraiavgmgidanyf
dsfvdvgdnilrllhypavksevfkinpgqvragehtdygsitllfqdsrgglqvkspng
qfidatpientvvvnagdllarwsndtikstvhrvveppkqedvhpprysiayfcnpnhk
syieaipgtyaaeserkyeginsgkylvqrlaatylehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >5c3qD (D:)
kaavnedglviplidfskflegdetlkletakailhgfqtagfiylknipiqpdfrehvf
ntsakffklpkekklevgwttpeanrgysapgrekvtqltdpaeiekirsaapdikesye
igredepghpnpwpaeqddlvgfkstmnnffdqckalhievmraiavgmgidanyfdsfv
dvgdnilrllhypavksevfkinpgqvragehtdygsitllfqdsrgglqvkspngqfid
atpientvvvnagdllarwsndtikstvhrvveppkqedvhpprysiayfcnpnhksyie
aipgtyaaeserkyeginsgkylvqrlaaty