PDB entry 5bqz
View 5bqz on RCSB PDB site
Description: Crystal structure of hemagglutinin of A/Chicken/Guangdong/S1311/2010 (H6N6) in complex with human-like receptor LSTc
Class: viral protein
Keywords: influenza, heamgglutinin, VIRAL PROTEIN
Deposited on
2015-05-29, released
2015-10-14
The last revision prior to the SCOPe 2.08 freeze date was dated
2020-07-29, with a file datestamp of
2020-07-04.
Experiment type: XRAY
Resolution: 2.89 Å
R-factor: N/A
AEROSPACI score: 0.25
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Hemagglutinin HA1 chain
Species: Influenza A virus (A/chicken/Guangdong/S1311/2010(H6N6)) [TaxId:1454272]
Gene: HA
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d5bqza_ - Chain 'B':
Compound: Hemagglutinin
Species: Influenza A virus (A/chicken/Guangdong/S1311/2010(H6N6)) [TaxId:1454272]
Gene: HA
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d5bqzb_ - Chain 'C':
Compound: Hemagglutinin HA1 chain
Species: Influenza A virus (A/chicken/Guangdong/S1311/2010(H6N6)) [TaxId:1454272]
Gene: HA
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d5bqzc_ - Chain 'D':
Compound: Hemagglutinin
Species: Influenza A virus (A/chicken/Guangdong/S1311/2010(H6N6)) [TaxId:1454272]
Gene: HA
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d5bqzd_ - Chain 'E':
Compound: Hemagglutinin HA1 chain
Species: Influenza A virus (A/chicken/Guangdong/S1311/2010(H6N6)) [TaxId:1454272]
Gene: HA
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d5bqze_ - Chain 'F':
Compound: Hemagglutinin
Species: Influenza A virus (A/chicken/Guangdong/S1311/2010(H6N6)) [TaxId:1454272]
Gene: HA
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d5bqzf_ - Heterogens: NAG
PDB Chain Sequences:
- Chain 'A':
Sequence; same for both SEQRES and ATOM records: (download)
>5bqzA (A:)
dkicigyhannsttkvdtileknvtvthsvellenqkeerfckisnkapldlrdctlegw
ilgnprcgilladqswsyiverpnarngicypgtlneaeelkaligsgerverfemfpks
twtgvntesgvssacplgngpsfyrnllwiiklksseypvirgtfnntgdksilyfwgvh
hppvtteqnalygsgdryvrmgtesmnfarspeiaarpavngqrgridyfwsilkpgetl
nvesngnliapwyayrfvnkdskgaifrsnlpiencdatcqttegvirtnktfqnvsplw
igecpkyvkskslrlatglrnvp
- Chain 'B':
Sequence, based on SEQRES records: (download)
>5bqzB (B:)
glfgaiagfieggwtgmidgwygyhhensqgsgyaadkestqkaidgitnkvnsiidkmn
tqfeavghefsnlerridnlnkrmedgfldvwtynaellvllenertldlhdanvknlhe
kvrsqlrdnandlgngcfefwhkcnnecmesvkngtydypkyqkesrlnrqkiesvklen
fdvyqgalvpr
Sequence, based on observed residues (ATOM records): (download)
>5bqzB (B:)
glfgaiagfieggwtgmidgwygyhhensqgsgyaadkestqkaidgitnkvnsiidkmn
tqfeavghefsnlerridnlnkrmedgfldvwtynaellvllenertldlhdanvknlhe
kvrsqlrdnandlgngcfefwhkcnnecmesvkngtydypkyqkesrlnr
- Chain 'C':
Sequence; same for both SEQRES and ATOM records: (download)
>5bqzC (C:)
dkicigyhannsttkvdtileknvtvthsvellenqkeerfckisnkapldlrdctlegw
ilgnprcgilladqswsyiverpnarngicypgtlneaeelkaligsgerverfemfpks
twtgvntesgvssacplgngpsfyrnllwiiklksseypvirgtfnntgdksilyfwgvh
hppvtteqnalygsgdryvrmgtesmnfarspeiaarpavngqrgridyfwsilkpgetl
nvesngnliapwyayrfvnkdskgaifrsnlpiencdatcqttegvirtnktfqnvsplw
igecpkyvkskslrlatglrnvp
- Chain 'D':
Sequence, based on SEQRES records: (download)
>5bqzD (D:)
glfgaiagfieggwtgmidgwygyhhensqgsgyaadkestqkaidgitnkvnsiidkmn
tqfeavghefsnlerridnlnkrmedgfldvwtynaellvllenertldlhdanvknlhe
kvrsqlrdnandlgngcfefwhkcnnecmesvkngtydypkyqkesrlnrqkiesvklen
fdvyqgalvpr
Sequence, based on observed residues (ATOM records): (download)
>5bqzD (D:)
glfgaiagfieggwtgmidgwygyhhensqgsgyaadkestqkaidgitnkvnsiidkmn
tqfeavghefsnlerridnlnkrmedgfldvwtynaellvllenertldlhdanvknlhe
kvrsqlrdnandlgngcfefwhkcnnecmesvkngtydypkyqkesrlnrqki
- Chain 'E':
Sequence; same for both SEQRES and ATOM records: (download)
>5bqzE (E:)
dkicigyhannsttkvdtileknvtvthsvellenqkeerfckisnkapldlrdctlegw
ilgnprcgilladqswsyiverpnarngicypgtlneaeelkaligsgerverfemfpks
twtgvntesgvssacplgngpsfyrnllwiiklksseypvirgtfnntgdksilyfwgvh
hppvtteqnalygsgdryvrmgtesmnfarspeiaarpavngqrgridyfwsilkpgetl
nvesngnliapwyayrfvnkdskgaifrsnlpiencdatcqttegvirtnktfqnvsplw
igecpkyvkskslrlatglrnvp
- Chain 'F':
Sequence, based on SEQRES records: (download)
>5bqzF (F:)
glfgaiagfieggwtgmidgwygyhhensqgsgyaadkestqkaidgitnkvnsiidkmn
tqfeavghefsnlerridnlnkrmedgfldvwtynaellvllenertldlhdanvknlhe
kvrsqlrdnandlgngcfefwhkcnnecmesvkngtydypkyqkesrlnrqkiesvklen
fdvyqgalvpr
Sequence, based on observed residues (ATOM records): (download)
>5bqzF (F:)
glfgaiagfieggwtgmidgwygyhhensqgsgyaadkestqkaidgitnkvnsiidkmn
tqfeavghefsnlerridnlnkrmedgfldvwtynaellvllenertldlhdanvknlhe
kvrsqlrdnandlgngcfefwhkcnnecmesvkngtydypkyqkesrln