PDB entry 5bnp

View 5bnp on RCSB PDB site
Description: Crystal structure of human enterovirus D68 in complex with 3'SLN
Class: virus
Keywords: Enterovirus, Capsid, Beta jelly roll, Virus, Receptor
Deposited on 2015-05-26, released 2015-11-18
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-07-29, with a file datestamp of 2020-07-04.
Experiment type: XRAY
Resolution: 2.15 Å
R-factor: N/A
AEROSPACI score: 0.35 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Capsid protein VP1
    Species: Enterovirus D68 [TaxId:42789]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5bnpa_
  • Chain 'B':
    Compound: capsid protein VP2
    Species: Enterovirus D68 [TaxId:42789]
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: capsid protein vp3
    Species: Enterovirus D68 [TaxId:42789]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d5bnpc_
  • Chain 'D':
    Compound: capsid protein VP4
    Species: Enterovirus D68 [TaxId:42789]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >5bnpA (A:)
vesiiktatdtvkseinaelgvvpslnavetgatsntepeeaiqtrtvinqhgvsetlve
nflgraalvskksfeyknhasssagthknffkwtintksfvqlrrklelftylrfdaeit
ilttvavngnndstymglpdltlqamfvptgaltpkeqdsfhwqsgsnasvffkisdppa
rmtipfmcinsaysvfydgfagfeknglyginpadtignlcvrivnehqpvgftvtvrvy
mkpkhikawaprpprtmpymsiananykgrdtapntlnaiignrasvttmphnivtt

    Sequence, based on observed residues (ATOM records): (download) 
    >5bnpA (A:)
vesiiktatdtvkseinaelgvvpslnavetgatsntepeeaiqtrtvinqhgvsetlve
nflgraalvskksfeyknhasssthknffkwtintksfvqlrrklelftylrfdaeitil
ttvavnymglpdltlqamfvptgaltpkeqdsfhwqsgsnasvffkisdpparmtipfmc
insaysvfydgfagfeknglyginpadtignlcvrivnehqpvgftvtvrvymkpkhika
waprpprtmpymsiananykgrdtapntlnaiignrasvttmphniv

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >5bnpC (C:)
gvptyllpgsgqflttddhssapvlpcfnptpemhipgqirnmlemiqvesmmeinntdg
angmerlrvdisvqadldqllfnipldiqldgplrntlvgnisryythwsgslemtfmfc
gsfmatgklilcytppggscpttretamlgthivwdfglqssitliipwisgshyrmfns
dakstnanvgyvtcfmqtnlivpsessdtcsligfiaakddfslrlmrdspdigqsnhlh
gaeaayq

  • Chain 'D':
    No sequence available.