PDB entry 5bnb

View 5bnb on RCSB PDB site
Description: Crystal structure of a Ube2S-ubiquitin conjugate
Class: cell cycle
Keywords: ubiquitin-conjugating enzyme, E2 enzyme, UBC domain, ubiquitination, cell cycle
Deposited on 2015-05-25, released 2016-02-17
The last revision prior to the SCOPe 2.06 freeze date was dated 2016-02-17, with a file datestamp of 2016-02-12.
Experiment type: XRAY
Resolution: 2.49 Å
R-factor: N/A
AEROSPACI score: 0.21 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Ubiquitin-conjugating enzyme E2 S
    Species: Homo sapiens [TaxId:9606]
    Gene: UBE2S, E2EPF, OK/SW-cl.73
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q16763 (Start-155)
      • engineered mutation (117)
    Domains in SCOPe 2.06: d5bnba_
  • Chain 'B':
    Compound: Ubiquitin-conjugating enzyme E2 S
    Species: Homo sapiens [TaxId:9606]
    Gene: UBE2S, E2EPF, OK/SW-cl.73
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q16763 (Start-155)
      • engineered mutation (117)
    Domains in SCOPe 2.06: d5bnbb_
  • Chain 'C':
    Compound: Ubiquitin-conjugating enzyme E2 S
    Species: Homo sapiens [TaxId:9606]
    Gene: UBE2S, E2EPF, OK/SW-cl.73
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q16763 (Start-155)
      • engineered mutation (117)
    Domains in SCOPe 2.06: d5bnbc_
  • Chain 'D':
    Compound: Ubiquitin-conjugating enzyme E2 S
    Species: Homo sapiens [TaxId:9606]
    Gene: UBE2S, E2EPF, OK/SW-cl.73
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q16763
      • engineered mutation (117)
  • Chain 'E':
    Compound: Polyubiquitin-B
    Species: Homo sapiens [TaxId:9606]
    Gene: UBB
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0CG47 (0-75)
      • engineered mutation (75)
    Domains in SCOPe 2.06: d5bnbe_
  • Chain 'F':
    Compound: Polyubiquitin-B
    Species: Homo sapiens [TaxId:9606]
    Gene: UBB
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d5bnbf_
  • Chain 'G':
    Compound: Polyubiquitin-B
    Species: Homo sapiens [TaxId:9606]
    Gene: UBB
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d5bnbg_
  • Chain 'I':
    Compound: Polyubiquitin-B
    Species: Homo sapiens [TaxId:9606]
    Gene: UBB
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0CG47 (Start-75)
      • engineered mutation (75)
    Domains in SCOPe 2.06: d5bnbi_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >5bnbA (A:)
    mnsnvenlpphiirlvykevttltadppdgikvfpneedltdlqvtiegpegtpyagglf
    rmklllgkdfpasppkgyfltkifhpnvgangeicvnvlkrdwtaelgirhvlltikmll
    ihpnpesalneeagrlllenyeeyaararllteihg
    

    Sequence, based on observed residues (ATOM records): (download)
    >5bnbA (A:)
    nlpphiirlvykevttltadppdgikvfpneedltdlqvtiegpegtpyagglfrmklll
    gkdfpasppkgyfltkifhpnvgangeicvnvlkrdwtaelgirhvlltikmllihpnpe
    salneeagrlllenyeeyaararllteihg
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >5bnbB (B:)
    mnsnvenlpphiirlvykevttltadppdgikvfpneedltdlqvtiegpegtpyagglf
    rmklllgkdfpasppkgyfltkifhpnvgangeicvnvlkrdwtaelgirhvlltikmll
    ihpnpesalneeagrlllenyeeyaararllteihg
    

    Sequence, based on observed residues (ATOM records): (download)
    >5bnbB (B:)
    nlpphiirlvykevttltadppdgikvfpneedltdlqvtiegpegtpyagglfrmklll
    gkdfpasppkgyfltkifhpnvgangeicvnvlkrdwtaelgirhvlltikmllihpnpe
    salneeagrlllenyeeyaararllteihg
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >5bnbC (C:)
    mnsnvenlpphiirlvykevttltadppdgikvfpneedltdlqvtiegpegtpyagglf
    rmklllgkdfpasppkgyfltkifhpnvgangeicvnvlkrdwtaelgirhvlltikmll
    ihpnpesalneeagrlllenyeeyaararllteihg
    

    Sequence, based on observed residues (ATOM records): (download)
    >5bnbC (C:)
    pphiirlvykevttltadppdgikvfpneedltdlqvtiegpegtpyagglfrmklllgk
    dfpasppkgyfltkifhpnvgangeicvnvlkrdwtaelgirhvlltikmllihpnpesa
    lneeagrlllenyeeyaararllteihg
    

  • Chain 'D':
    No sequence available.

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records: (download)
    >5bnbE (E:)
    mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
    iqkestlhlvlrlrgc
    

  • Chain 'F':
    Sequence, based on SEQRES records: (download)
    >5bnbF (F:)
    mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
    iqkestlhlvlrlrgc
    

    Sequence, based on observed residues (ATOM records): (download)
    >5bnbF (F:)
    mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
    iqkestlhlvlr
    

  • Chain 'G':
    Sequence, based on SEQRES records: (download)
    >5bnbG (G:)
    mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
    iqkestlhlvlrlrgc
    

    Sequence, based on observed residues (ATOM records): (download)
    >5bnbG (G:)
    mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
    iqkestlhlvlr
    

  • Chain 'I':
    Sequence, based on SEQRES records: (download)
    >5bnbI (I:)
    mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
    iqkestlhlvlrlrgc
    

    Sequence, based on observed residues (ATOM records): (download)
    >5bnbI (I:)
    ifvktltgktitlevepsdtienvkakiqdkegippdqqrlifdgrtlsdyniqkestlh
    lvlrlrgc