PDB entry 4zmt

View 4zmt on RCSB PDB site
Description: Crystal structure of human P-cadherin (ss-X-dimer-long)
Class: cell adhesion
Keywords: dimerization, conformational change, CELL ADHESION
Deposited on 2015-05-04, released 2016-09-07
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-02-19, with a file datestamp of 2020-02-14.
Experiment type: XRAY
Resolution: 2.7 Å
R-factor: N/A
AEROSPACI score: 0.18 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Cadherin-3
    Species: Homo sapiens [TaxId:9606]
    Gene: Cdh3, Cdhp
    Database cross-references and differences (RAF-indexed):
    • Uniprot P22223 (1-End)
      • initiating methionine (0)
    Domains in SCOPe 2.08: d4zmta1, d4zmta2
  • Chain 'B':
    Compound: Cadherin-3
    Species: Homo sapiens [TaxId:9606]
    Gene: Cdh3, Cdhp
    Database cross-references and differences (RAF-indexed):
    • Uniprot P22223 (1-End)
      • initiating methionine (0)
    Domains in SCOPe 2.08: d4zmtb1, d4zmtb2
  • Chain 'C':
    Compound: Cadherin-3
    Species: Homo sapiens [TaxId:9606]
    Gene: Cdh3, Cdhp
    Database cross-references and differences (RAF-indexed):
    • Uniprot P22223 (1-End)
      • initiating methionine (0)
    Domains in SCOPe 2.08: d4zmtc1, d4zmtc2
  • Chain 'D':
    Compound: Cadherin-3
    Species: Homo sapiens [TaxId:9606]
    Gene: Cdh3, Cdhp
    Database cross-references and differences (RAF-indexed):
    • Uniprot P22223 (1-End)
      • initiating methionine (0)
    Domains in SCOPe 2.08: d4zmtd1, d4zmtd2
  • Chain 'E':
    Compound: Cadherin-3
    Species: Homo sapiens [TaxId:9606]
    Gene: Cdh3, Cdhp
    Database cross-references and differences (RAF-indexed):
    • Uniprot P22223 (1-End)
      • initiating methionine (0)
    Domains in SCOPe 2.08: d4zmte1, d4zmte2
  • Chain 'F':
    Compound: Cadherin-3
    Species: Homo sapiens [TaxId:9606]
    Gene: Cdh3, Cdhp
    Database cross-references and differences (RAF-indexed):
    • Uniprot P22223 (1-End)
      • initiating methionine (0)
    Domains in SCOPe 2.08: d4zmtf1, d4zmtf2
  • Heterogens: CA, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4zmtA (A:)
mdwvvapisvpengkgpfpqrlnqlksnkdrdtkifysitgpgadsppegvfaveketgw
lllnkpldreeiakyelfghavsengasvedpmnisiivtdqndhkpkftqdtfrgsvle
gvlpgtsvmqvtatdeddaiytyngvvaysihsqepkdphdlmftihrstgtisvissgl
drekvpeytltiqatdmdgdgstttavavveildandnapmfdpqkyeahvp

    Sequence, based on observed residues (ATOM records): (download) 
    >4zmtA (A:)
mdwvvapisvpengkgpfpqrlnqlksnkdrdtkifysitgpgadsppegvfaveketgw
lllnkpldreeiakyelfghavsengasvedpmnisiivtdqndhkpkftqdtfrgsvle
gvlpgtsvmqvtatdeddaiytyngvvaysihsqepkdphdlmftihrstgtisvissgl
drekvpeytltiqatdmdgdgstttavavveild

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4zmtB (B:)
mdwvvapisvpengkgpfpqrlnqlksnkdrdtkifysitgpgadsppegvfaveketgw
lllnkpldreeiakyelfghavsengasvedpmnisiivtdqndhkpkftqdtfrgsvle
gvlpgtsvmqvtatdeddaiytyngvvaysihsqepkdphdlmftihrstgtisvissgl
drekvpeytltiqatdmdgdgstttavavveildandnapmfdpqkyeahvp

    Sequence, based on observed residues (ATOM records): (download) 
    >4zmtB (B:)
mdwvvapisvpengkgpfpqrlnqlksnkdrdtkifysitgpgadsppegvfaveketgw
lllnkpldreeiakyelfghavsengasvedpmnisiivtdqndhkpkftqdtfrgsvle
gvlpgtsvmqvtatdeddaiytyngvvaysihsqepkdphdlmftihrstgtisvissgl
drekvpeytltiqatdmdgdgstttavavveildan

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >4zmtC (C:)
mdwvvapisvpengkgpfpqrlnqlksnkdrdtkifysitgpgadsppegvfaveketgw
lllnkpldreeiakyelfghavsengasvedpmnisiivtdqndhkpkftqdtfrgsvle
gvlpgtsvmqvtatdeddaiytyngvvaysihsqepkdphdlmftihrstgtisvissgl
drekvpeytltiqatdmdgdgstttavavveildandnapmfdpqkyeahvp

    Sequence, based on observed residues (ATOM records): (download) 
    >4zmtC (C:)
mdwvvapisvpengkgpfpqrlnqlksnkdrdtkifysitgpgadsppegvfaveketgw
lllnkpldreeiakyelfghavsengasvedpmnisiivtdqndhkpkftqdtfrgsvle
gvlpgtsvmqvtatdeddaiytyngvvaysihsqepkdphdlmftihrstgtisvissgl
drekvpeytltiqatdmdgdgstttavavveild

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >4zmtD (D:)
mdwvvapisvpengkgpfpqrlnqlksnkdrdtkifysitgpgadsppegvfaveketgw
lllnkpldreeiakyelfghavsengasvedpmnisiivtdqndhkpkftqdtfrgsvle
gvlpgtsvmqvtatdeddaiytyngvvaysihsqepkdphdlmftihrstgtisvissgl
drekvpeytltiqatdmdgdgstttavavveildandnapmfdpqkyeahvp

    Sequence, based on observed residues (ATOM records): (download) 
    >4zmtD (D:)
mdwvvapisvpengkgpfpqrlnqlksnkdtkifysitgpgadsppegvfaveketgwll
lnkpldreeiakyelfghavsengasvedpmnisiivtdqndhkpkftqdtfrgsvlegv
lpgtsvmqvtatdeddaiytyngvvaysihsqepkdphdlmftihrstgtisvissgldr
ekvpeytltiqatdmdgdgstttavavveilda

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >4zmtE (E:)
mdwvvapisvpengkgpfpqrlnqlksnkdrdtkifysitgpgadsppegvfaveketgw
lllnkpldreeiakyelfghavsengasvedpmnisiivtdqndhkpkftqdtfrgsvle
gvlpgtsvmqvtatdeddaiytyngvvaysihsqepkdphdlmftihrstgtisvissgl
drekvpeytltiqatdmdgdgstttavavveildandnapmfdpqkyeahvp

    Sequence, based on observed residues (ATOM records): (download) 
    >4zmtE (E:)
mdwvvapisvpengkgpfpqrlnqlksnkdrdtkifysitgpgadsppegvfaveketgw
lllnkpldreeiakyelfghavsengasvedpmnisiivtdqndhkpkftqdtfrgsvle
gvlpgtsvmqvtatdeddaiytyngvvaysihsqepkdphdlmftihrstgtisvissgl
drekvpeytltiqatdmdgdgstttavavveildan

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >4zmtF (F:)
mdwvvapisvpengkgpfpqrlnqlksnkdrdtkifysitgpgadsppegvfaveketgw
lllnkpldreeiakyelfghavsengasvedpmnisiivtdqndhkpkftqdtfrgsvle
gvlpgtsvmqvtatdeddaiytyngvvaysihsqepkdphdlmftihrstgtisvissgl
drekvpeytltiqatdmdgdgstttavavveildandnapmfdpqkyeahvp

    Sequence, based on observed residues (ATOM records): (download) 
    >4zmtF (F:)
mdwvvapisvpengkgpfpqrlnqlksndtkifysitgpgadsppegvfaveketgwlll
nkpldreeiakyelfghavsengasvedpmnisiivtdqndhkpkftqdtfrmqvtatde
ddaiytyngvvaysihlmftihrstgtisvytltiqatdmdgdgstttavavv