PDB entry 4yxk

View 4yxk on RCSB PDB site
Description: Crystal structure of Elk prion protein complexed with POM1 FAB
Class: immune system
Keywords: PRION, ANTIBODY, Immune system complex, IMMUNE SYSTEM
Deposited on 2015-03-23, released 2015-09-23
The last revision prior to the SCOPe 2.05 freeze date was dated 2015-09-23, with a file datestamp of 2015-09-18.
Experiment type: XRAY
Resolution: 2.81 Å
R-factor: N/A
AEROSPACI score: 0.15 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: major prion protein
    Species: Cervus elaphus nelsoni [TaxId:9864]
    Gene: PRNP, PRP
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d4yxka_
  • Chain 'H':
    Compound: POM1 Fab Heavy chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 4YXK (0-217)
  • Chain 'L':
    Compound: POM1 Fab Light chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 4YXK (0-212)
    Domains in SCOPe 2.05: d4yxkl1, d4yxkl2
  • Heterogens: NA, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >4yxkA (A:)
    mgsshhhhhhssglvprgshmledphmvvgglggymlgsamsrplihfgndyedryyren
    myrypnqvyyrpvdqynnqntfvhdcvnitvkqhtvttttkgenftetdikmmervveqm
    citqyqreseayyqr
    

    Sequence, based on observed residues (ATOM records): (download)
    >4yxkA (A:)
    gglggymlgsamsrplihfgndyedryyrenmyrypnqvyyrpvdqynnqntfvhdcvni
    tvkqhtvttttkgenftetdikmmervveqmcitqyqrese
    

  • Chain 'H':
    No sequence available.

  • Chain 'L':
    Sequence; same for both SEQRES and ATOM records: (download)
    >4yxkL (L:)
    divltqspailsvspgervsfscrasqnigtsihwyqqrtnesprliikyasesisgips
    rfsgsgsgtdftlsinsvesediadyycqqsntwpytfgggtklelkradaaptvsifpp
    sseqltsggasvvcflnnfypkdinvkwkidgserqngvlnsetdqdskdstysmsstlt
    ltkdeyerhntytceathktstspivksfnrne