PDB entry 4yq3

View 4yq3 on RCSB PDB site
Description: Crystal structure of TrmD, a M1G37 tRNA Methyltransferase with SAM-competitive compounds
Class: transferase/transferase inhibitor
Keywords: TrmD, SAM-binding, knot, transferase-transferase inhibitor complex
Deposited on 2015-03-13, released 2016-03-16
The last revision prior to the SCOPe 2.08 freeze date was dated 2016-03-16, with a file datestamp of 2016-03-11.
Experiment type: XRAY
Resolution: 2.49 Å
R-factor: N/A
AEROSPACI score: 0.22 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: tRNA (guanine-N(1)-)-methyltransferase
    Species: Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) [TaxId:71421]
    Gene: trmD, HI_0202
    Database cross-references and differences (RAF-indexed):
    • Uniprot P43912 (8-End)
      • expression tag (0-7)
    Domains in SCOPe 2.08: d4yq3a1, d4yq3a2
  • Heterogens: 4G1, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4yq3A (A:)
glvprgshmwigvislfpemfkaitefgvtgravkhnllkvecwnprdftfdkhktvddr
pygggpgmlmmvqplrdaihtakaaagegakviylspqgrkldqggvtelaqnqklilvc
gryegiderliqteideewsigdyvltggelpamtlidavarfipgvlgkqasaeedsfa
dglldcphytrpevlegltvppvlmsghheeirkwrlkqslqrtwlrrpelleglaltde
qrkllkeaqaehns

    Sequence, based on observed residues (ATOM records): (download) 
    >4yq3A (A:)
glvprgshmwigvislfpemfkaitefgvtgravkhnllkvecwnprdftfdkhktvddr
pygggpgmlmmvqplrdaihtakaaagegakviylspqgrkldqggvtelaqnqklilvc
gryegiderliqteideewsigdyvltggelpamtlidavarfipgvlgdglldcphytr
pevlegltvppvlmsghheeirkwrlkqslqrtwlrrpelleglaltdeqrkllkeaqae
hn