PDB entry 4yka

View 4yka on RCSB PDB site
Description: The structure of Agrobacterium tumefaciens ClpS2 in complex with L-tyrosinamide
Class: protein binding
Keywords: N-end rule, Protease adaptor, PROTEIN BINDING
Deposited on 2015-03-04, released 2016-01-27
The last revision prior to the SCOPe 2.07 freeze date was dated 2017-09-20, with a file datestamp of 2017-09-15.
Experiment type: XRAY
Resolution: 2.8 Å
R-factor: N/A
AEROSPACI score: 0.17 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: ATP-dependent Clp protease adapter protein ClpS 2
    Species: Agrobacterium fabrum (strain C58 / ATCC 33970) [TaxId:176299]
    Gene: clpS2, Atu2232, AGR_C_4060
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d4ykaa_
  • Chain 'B':
    Compound: ATP-dependent Clp protease adapter protein ClpS 2
    Species: Agrobacterium fabrum (strain C58 / ATCC 33970) [TaxId:176299]
    Gene: clpS2, Atu2232, AGR_C_4060
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d4ykab_
  • Chain 'C':
    Compound: ATP-dependent Clp protease adapter protein ClpS 2
    Species: Agrobacterium fabrum (strain C58 / ATCC 33970) [TaxId:176299]
    Gene: clpS2, Atu2232, AGR_C_4060
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d4ykac_
  • Chain 'D':
    Compound: ATP-dependent Clp protease adapter protein ClpS 2
    Species: Agrobacterium fabrum (strain C58 / ATCC 33970) [TaxId:176299]
    Gene: clpS2, Atu2232, AGR_C_4060
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d4ykad_
  • Heterogens: SO4, TYC, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4ykaA (A:)
msdspvdlkpkpkvkpklerpklykvmllnddytprefvtvvlkavfrmsedtgrrvmmt
ahrfgsavvvvcerdiaetkakeatdlgkeagfplmfttepee

    Sequence, based on observed residues (ATOM records): (download) 
    >4ykaA (A:)
rpklykvmllnddytprefvtvvlkavfrmsedtgrrvmmtahrfgsavvvvcerdiaet
kakeatdlgkeagfplmfttepe

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4ykaB (B:)
msdspvdlkpkpkvkpklerpklykvmllnddytprefvtvvlkavfrmsedtgrrvmmt
ahrfgsavvvvcerdiaetkakeatdlgkeagfplmfttepee

    Sequence, based on observed residues (ATOM records): (download) 
    >4ykaB (B:)
rpklykvmllnddytprefvtvvlkavfrmsedtgrrvmmtahrfgsavvvvcerdiaet
kakeatdlgkeagfplmfttepe

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >4ykaC (C:)
msdspvdlkpkpkvkpklerpklykvmllnddytprefvtvvlkavfrmsedtgrrvmmt
ahrfgsavvvvcerdiaetkakeatdlgkeagfplmfttepee

    Sequence, based on observed residues (ATOM records): (download) 
    >4ykaC (C:)
rpklykvmllnddytprefvtvvlkavfrmsedtgrrvmmtahrfgsavvvvcerdiaet
kakeatdlgkeagfplmfttepee

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >4ykaD (D:)
msdspvdlkpkpkvkpklerpklykvmllnddytprefvtvvlkavfrmsedtgrrvmmt
ahrfgsavvvvcerdiaetkakeatdlgkeagfplmfttepee

    Sequence, based on observed residues (ATOM records): (download) 
    >4ykaD (D:)
rpklykvmllnddytprefvtvvlkavfrmsedtgrrvmmtahrfgsavvvvcerdiaet
kakeatdlgkeagfplmfttepe