PDB entry 4yk4

View 4yk4 on RCSB PDB site
Description: Human antibody 641 I-9 in complex with influenza hemagglutinin H1 Solomon Islands/03/2006
Class: Viral protein/Immune system
Keywords: influenza, antibody, complex, hemagglutinin, Viral protein-Immune system complex
Deposited on 2015-03-03, released 2015-05-27
The last revision prior to the SCOPe 2.05 freeze date was dated 2015-05-27, with a file datestamp of 2015-05-22.
Experiment type: XRAY
Resolution: 2.8 Å
R-factor: N/A
AEROSPACI score: 0.16 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Hemagglutinin
    Species: Influenza A virus [TaxId:464623]
    Gene: HA
    Database cross-references and differences (RAF-indexed):
    • Uniprot A7UPX0
      • conflict (182)
  • Chain 'B':
    Compound: 641 I-9 VLCL antibody
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 4YK4 (0-End)
    Domains in SCOPe 2.05: d4yk4b1, d4yk4b2
  • Chain 'C':
    Compound: 641 I-9 VHCH antibody
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 4YK4 (0-End)
  • Chain 'E':
    Compound: Hemagglutinin
    Species: Influenza A virus [TaxId:464623]
    Gene: HA
    Database cross-references and differences (RAF-indexed):
    • Uniprot A7UPX0
      • conflict (182)
  • Chain 'Y':
    Compound: 641 I-9 VLCL antibody
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 4YK4 (0-End)
    Domains in SCOPe 2.05: d4yk4y1, d4yk4y2
  • Chain 'Z':
    Compound: 641 I-9 VHCH antibody
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 4YK4 (0-End)
  • Heterogens: NAG, HOH

PDB Chain Sequences:

  • Chain 'A':
    No sequence available.

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4yk4B (B:)
diqmtqspsslsasvgdrvtitcrasqsissylnwyqqkpgkapklliyaasslqsgvps
rfsgsgsgtdftltisslqpedfatyycqqsysipltfgqgtrleikrtvaapsvfifpp
sdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstlt
lskadyekhkvyacevthqglsspvtksfnrgec

    Sequence, based on observed residues (ATOM records): (download) 
    >4yk4B (B:)
diqmtqspsslsasvgdrvtitcrasqsissylnwyqqkpgkapklliyaasslqsgvps
rfsgsgsgtdftltisslqpedfatyycqqsysipltfgqgtrleikrtvaapsvfifpp
sdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstlt
lskadyekhkvyacevthqglsspvtksfnr

  • Chain 'C':
    No sequence available.

  • Chain 'E':
    No sequence available.

  • Chain 'Y':
    Sequence, based on SEQRES records: (download) 
    >4yk4Y (Y:)
diqmtqspsslsasvgdrvtitcrasqsissylnwyqqkpgkapklliyaasslqsgvps
rfsgsgsgtdftltisslqpedfatyycqqsysipltfgqgtrleikrtvaapsvfifpp
sdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstlt
lskadyekhkvyacevthqglsspvtksfnrgec

    Sequence, based on observed residues (ATOM records): (download) 
    >4yk4Y (Y:)
diqmtqspsslsasvgdrvtitcrasqsissylnwyqqkpgkapklliyaasslqsgvps
rfsgsgsgtdftltisslqpedfatyycqqsysipltfgqgtrleikrtvaapsvfifpp
sdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstlt
lskadyekhkvyacevthqglsspvtksfnr

  • Chain 'Z':
    No sequence available.