PDB entry 4ygf

View 4ygf on RCSB PDB site
Description: Crystal structure of the complex of Helicobacter pylori- carbonic anhydrase with acetazolamide
Class: lyase
Keywords: periplasm, zinc metalloenzyme, LYASE
Deposited on 2015-02-26, released 2015-07-01
The last revision prior to the SCOPe 2.05 freeze date was dated 2015-07-01, with a file datestamp of 2015-06-26.
Experiment type: XRAY
Resolution: 2 Å
R-factor: N/A
AEROSPACI score: 0.3 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Alpha-carbonic anhydrase
    Species: Helicobacter pylori [TaxId:85962]
    Gene: C694_06140
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d4ygfa_
  • Chain 'B':
    Compound: Alpha-carbonic anhydrase
    Species: Helicobacter pylori [TaxId:85962]
    Gene: C694_06140
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d4ygfb_
  • Chain 'C':
    Compound: Alpha-carbonic anhydrase
    Species: Helicobacter pylori [TaxId:85962]
    Gene: C694_06140
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d4ygfc_
  • Chain 'D':
    Compound: Alpha-carbonic anhydrase
    Species: Helicobacter pylori [TaxId:85962]
    Gene: C694_06140
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d4ygfd_
  • Chain 'E':
    Compound: Alpha-carbonic anhydrase
    Species: Helicobacter pylori [TaxId:85962]
    Gene: C694_06140
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d4ygfe_
  • Chain 'F':
    Compound: Alpha-carbonic anhydrase
    Species: Helicobacter pylori [TaxId:85962]
    Gene: C694_06140
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d4ygff_
  • Chain 'G':
    Compound: Alpha-carbonic anhydrase
    Species: Helicobacter pylori [TaxId:85962]
    Gene: C694_06140
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d4ygfg_
  • Chain 'H':
    Compound: Alpha-carbonic anhydrase
    Species: Helicobacter pylori [TaxId:85962]
    Gene: C694_06140
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d4ygfh_
  • Heterogens: ZN, CL, AZM, GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4ygfA (A:)
gidpftntkwdyknkengphrwdklhkdfevcksgksqspiniehyyhtqdkadlqfkya
askpkavffthhtlkasfeptnhinyrghdyvldnvhfhapmeflinnktrplsahfvhk
dakgrllvlaigfeegkenpnldpilegiqkkqnfkevaldaflpksinyyhfngsltap
pctegvawfvieeplevsakqlaeikkrmknspnqrpvqpdyntviikssaetr

    Sequence, based on observed residues (ATOM records): (download) 
    >4ygfA (A:)
kwdyknkengphrwdklhkdfevcksgksqspiniehyyhtqdkadlqfkyaaskpkavf
fthhtlkasfeptnhinyrghdyvldnvhfhapmeflinnktrplsahfvhkdakgrllv
laigfeegkenpnldpilegiqkkqnfkevaldaflpksinyyhfngsltappctegvaw
fvieeplevsakqlaeikkrmknspnqrpvqpdyntviikssaetr

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4ygfB (B:)
gidpftntkwdyknkengphrwdklhkdfevcksgksqspiniehyyhtqdkadlqfkya
askpkavffthhtlkasfeptnhinyrghdyvldnvhfhapmeflinnktrplsahfvhk
dakgrllvlaigfeegkenpnldpilegiqkkqnfkevaldaflpksinyyhfngsltap
pctegvawfvieeplevsakqlaeikkrmknspnqrpvqpdyntviikssaetr

    Sequence, based on observed residues (ATOM records): (download) 
    >4ygfB (B:)
tkwdyknkengphrwdklhkdfevcksgksqspiniehyyhtdlqfkyaaskpkavffth
htlkasfeptnhinyrghdyvldnvhfhapmeflinnktrplsahfvhkdakgrllvlai
gfeegkenpnldpilegiqkkqnfkevaldaflpksinyyhfngsltappctegvawfvi
eeplevsakqlaeikkrmknspnqrpvqpdyntviikssaetr

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >4ygfC (C:)
gidpftntkwdyknkengphrwdklhkdfevcksgksqspiniehyyhtqdkadlqfkya
askpkavffthhtlkasfeptnhinyrghdyvldnvhfhapmeflinnktrplsahfvhk
dakgrllvlaigfeegkenpnldpilegiqkkqnfkevaldaflpksinyyhfngsltap
pctegvawfvieeplevsakqlaeikkrmknspnqrpvqpdyntviikssaetr

    Sequence, based on observed residues (ATOM records): (download) 
    >4ygfC (C:)
tkwdyknkengphrwdklhkdfevcksgksqspiniehyyhtqdkadlqfkyaaskpkav
ffthhtlkasfeptnhinyrghdyvldnvhfhapmeflinnktrplsahfvhkdakgrll
vlaigfeegkenpnldpilegiqkkqnfkevaldaflpksinyyhfngsltappctegva
wfvieeplevsakqlaeikkrmknspnqrpvqpdyntviikssaetr

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >4ygfD (D:)
gidpftntkwdyknkengphrwdklhkdfevcksgksqspiniehyyhtqdkadlqfkya
askpkavffthhtlkasfeptnhinyrghdyvldnvhfhapmeflinnktrplsahfvhk
dakgrllvlaigfeegkenpnldpilegiqkkqnfkevaldaflpksinyyhfngsltap
pctegvawfvieeplevsakqlaeikkrmknspnqrpvqpdyntviikssaetr

    Sequence, based on observed residues (ATOM records): (download) 
    >4ygfD (D:)
kwdyknkengphrwdklhkdfevcksgksqspiniehyyhtqdkadlqfkyaaskpkavf
fthhtlkasfeptnhinyrghdyvldnvhfhapmeflinnktrplsahfvhkdakgrllv
laigfgkenpnldpilegiqkkqnfkevaldaflpksinyyhfngsltappctegvawfv
ieeplevsakqlaeikkrmknspnqrpvqpdyntviikssaetr

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >4ygfE (E:)
gidpftntkwdyknkengphrwdklhkdfevcksgksqspiniehyyhtqdkadlqfkya
askpkavffthhtlkasfeptnhinyrghdyvldnvhfhapmeflinnktrplsahfvhk
dakgrllvlaigfeegkenpnldpilegiqkkqnfkevaldaflpksinyyhfngsltap
pctegvawfvieeplevsakqlaeikkrmknspnqrpvqpdyntviikssaetr

    Sequence, based on observed residues (ATOM records): (download) 
    >4ygfE (E:)
kwdyknkengphrwdklhkdfevcksgksqspiniehyyhtqdkadlqfkyaaskpkavf
fthhtlkasfeptnhinyrghdyvldnvhfhapmeflinnktrplsahfvhkdakgrllv
laigfeegkenpnldpilegiqkkqnfkevaldaflpksinyyhfngsltappctegvaw
fvieeplevsakqlaeikkrmknspnqrpvqpdyntviikssaetr

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >4ygfF (F:)
gidpftntkwdyknkengphrwdklhkdfevcksgksqspiniehyyhtqdkadlqfkya
askpkavffthhtlkasfeptnhinyrghdyvldnvhfhapmeflinnktrplsahfvhk
dakgrllvlaigfeegkenpnldpilegiqkkqnfkevaldaflpksinyyhfngsltap
pctegvawfvieeplevsakqlaeikkrmknspnqrpvqpdyntviikssaetr

    Sequence, based on observed residues (ATOM records): (download) 
    >4ygfF (F:)
wdyknkengphrwdklhkdfevcksgksqspiniehyyhtqdkadlqfkyaaskpkavff
thhtlkasfeptnhinyrghdyvldnvhfhapmeflinnktrplsahfvhkdakgrllvl
aigfeegkenpnldpilegiqkkqnfkevaldaflpksinyyhfngsltappctegvawf
vieeplevsakqlaeikkrmknspnqrpvqpdyntviikssaetr

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >4ygfG (G:)
gidpftntkwdyknkengphrwdklhkdfevcksgksqspiniehyyhtqdkadlqfkya
askpkavffthhtlkasfeptnhinyrghdyvldnvhfhapmeflinnktrplsahfvhk
dakgrllvlaigfeegkenpnldpilegiqkkqnfkevaldaflpksinyyhfngsltap
pctegvawfvieeplevsakqlaeikkrmknspnqrpvqpdyntviikssaetr

    Sequence, based on observed residues (ATOM records): (download) 
    >4ygfG (G:)
ntkwdyknkengphrwdklhkdfevcksgksqspiniehyyhtqdkadlqfkyaaskpka
vffthhtlkasfeptnhinyrghdyvldnvhfhapmeflinnktrplsahfvhkdakgrl
lvlaigfeegkenpnldpilegiqkkqnfkevaldaflpksinyyhfngsltappctegv
awfvieeplevsakqlaeikkrmknspnqrpvqpdyntviikssaetr

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >4ygfH (H:)
gidpftntkwdyknkengphrwdklhkdfevcksgksqspiniehyyhtqdkadlqfkya
askpkavffthhtlkasfeptnhinyrghdyvldnvhfhapmeflinnktrplsahfvhk
dakgrllvlaigfeegkenpnldpilegiqkkqnfkevaldaflpksinyyhfngsltap
pctegvawfvieeplevsakqlaeikkrmknspnqrpvqpdyntviikssaetr

    Sequence, based on observed residues (ATOM records): (download) 
    >4ygfH (H:)
wdyknkengphrwdklhkdfevcksgksqspiniehyyhtqdkadlqfkyaaskpkavff
thhtlkasfeptnhinyrghdyvldnvhfhapmeflinnktrplsahfvhkdakgrllvl
aigfeegkenpnldpilegiqkkqnfkevaldaflpksinyyhfngsltappctegvawf
vieeplevsakqlaeikkrmknspnqrpvqpdyntviikssaetr