PDB entry 4xkl

View 4xkl on RCSB PDB site
Description: Crystal structure of NDP52 ZF2 in complex with mono-ubiquitin
Class: protein binding/metal binding protein
Keywords: NDP52, ubiquitin, zinc finger, autophagy receptor, complex, PROTEIN BINDING-METAL BINDING PROTEIN complex
Deposited on 2015-01-12, released 2015-11-11
The last revision prior to the SCOPe 2.06 freeze date was dated 2015-11-11, with a file datestamp of 2015-11-06.
Experiment type: XRAY
Resolution: 2.1 Å
R-factor: N/A
AEROSPACI score: 0.29 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Ubiquitin
    Species: Homo sapiens [TaxId:9606]
    Gene: UBA52
    Database cross-references and differences (RAF-indexed):
    • Uniprot P62987 (4-79)
      • expression tag (2-3)
    Domains in SCOPe 2.06: d4xkla1, d4xkla2
  • Chain 'B':
    Compound: Calcium-binding and coiled-coil domain-containing protein 2
    Species: Homo sapiens [TaxId:9606]
    Gene: CALCOCO2, NDP52
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Ubiquitin
    Species: Homo sapiens [TaxId:9606]
    Gene: UBA52
    Database cross-references and differences (RAF-indexed):
    • Uniprot P62987 (4-79)
      • expression tag (2-3)
    Domains in SCOPe 2.06: d4xklc1, d4xklc2
  • Chain 'D':
    Compound: Calcium-binding and coiled-coil domain-containing protein 2
    Species: Homo sapiens [TaxId:9606]
    Gene: CALCOCO2, NDP52
    Database cross-references and differences (RAF-indexed):
  • Heterogens: GOL, ACT, ZN, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >4xklA (A:)
    gpgsmqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtl
    sdyniqkestlhlvlrlrgg
    

    Sequence, based on observed residues (ATOM records): (download)
    >4xklA (A:)
    gsmqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsd
    yniqkestlhlvlrlrgg
    

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >4xklC (C:)
    gpgsmqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtl
    sdyniqkestlhlvlrlrgg
    

    Sequence, based on observed residues (ATOM records): (download)
    >4xklC (C:)
    gsmqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsd
    yniqkestlhlvlrlrgg
    

  • Chain 'D':
    No sequence available.