PDB entry 4xdo

View 4xdo on RCSB PDB site
Description: Crystal structure of human KDM4C catalytic domain with OGA
Class: oxidoreductase
Keywords: lysine-specific demethylase 4c, oxidoreductase
Deposited on 2014-12-19, released 2015-03-25
The last revision prior to the SCOPe 2.08 freeze date was dated 2015-07-01, with a file datestamp of 2015-06-26.
Experiment type: XRAY
Resolution: 1.97 Å
R-factor: N/A
AEROSPACI score: 0.32 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: lysine-specific demethylase 4c
    Species: Homo sapiens [TaxId:9606]
    Gene: KDM4C, GASC1, JHDM3C, JMJD2C, KIAA0780
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4xdoa_
  • Chain 'B':
    Compound: lysine-specific demethylase 4c
    Species: Homo sapiens [TaxId:9606]
    Gene: KDM4C, GASC1, JHDM3C, JMJD2C, KIAA0780
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4xdob_
  • Heterogens: ZN, FE, OGA, PGE, EDO, PG4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >4xdoA (A:)
lnpsckimtfrpsmeefrefnkylaymeskgahraglakvippkewkprqcyddidnlli
papiqqmvtgqsglftqyniqkkamtvkefrqlansgkyctpryldyedlerkywknltf
vapiygadingsiydegvdewniarlntvldvveeecgisiegvntpylyfgmwkttfaw
htedmdlysinylhfgepkswyaippehgkrlerlaqgffpsssqgcdaflrhkmtlisp
svlkkygipfdkitqeagefmitfpygyhagfnhgfncaestnfatvrwidygkvaklct
crkdmvkismdifvrkfqpdryqlwkqgkdiytidhtk

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >4xdoB (B:)
lnpsckimtfrpsmeefrefnkylaymeskgahraglakvippkewkprqcyddidnlli
papiqqmvtgqsglftqyniqkkamtvkefrqlansgkyctpryldyedlerkywknltf
vapiygadingsiydegvdewniarlntvldvveeecgisiegvntpylyfgmwkttfaw
htedmdlysinylhfgepkswyaippehgkrlerlaqgffpsssqgcdaflrhkmtlisp
svlkkygipfdkitqeagefmitfpygyhagfnhgfncaestnfatvrwidygkvaklct
crkdmvkismdifvrkfqpdryqlwkqgkdiytidhtk