PDB entry 4x7d

View 4x7d on RCSB PDB site
Description: Crystal structure of 2012 NSW GII.4 P domain in complex with Nano-85
Class: viral protein
Keywords: Nanobody, VHH domain, Norovirus, Protruding domain, viral protein
Deposited on 2014-12-09, released 2014-12-31
The last revision prior to the SCOPe 2.07 freeze date was dated 2015-03-04, with a file datestamp of 2015-02-27.
Experiment type: XRAY
Resolution: 2.15 Å
R-factor: N/A
AEROSPACI score: 0.28 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: vp1
    Species: Norovirus Hu/GII.4/Sydney/NSW0514/2012/AU [TaxId:1241973]
    Gene:
    Database cross-references and differences (RAF-indexed):
    • Uniprot K4LM89 (1-306)
      • expression tag (0)
  • Chain 'B':
    Compound: vp1
    Species: Norovirus Hu/GII.4/Sydney/NSW0514/2012/AU [TaxId:1241973]
    Gene:
    Database cross-references and differences (RAF-indexed):
    • Uniprot K4LM89 (1-306)
      • expression tag (0)
  • Chain 'C':
    Compound: Nano-85 Nanobody
    Species: LAMA GLAMA [TaxId:9844]
    Gene:
    Database cross-references and differences (RAF-indexed):
    • PDB 4X7D (0-End)
    Domains in SCOPe 2.07: d4x7dc_
  • Chain 'D':
    Compound: Nano-85 Nanobody
    Species: LAMA GLAMA [TaxId:9844]
    Gene:
    Database cross-references and differences (RAF-indexed):
    • PDB 4X7D (0-End)
    Domains in SCOPe 2.07: d4x7dd1, d4x7dd2
  • Heterogens: EDO, HOH

PDB Chain Sequences:

  • Chain 'A':
    No sequence available.

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >4x7dC (C:)
    dvqlvesggglvqpggslrlscaasgsifsiyamgwyrqapgkqrelvasissgggtnya
    dsvkgrftisgdnakntvylqmnslkpedtavyyckredysayappsgsrgrgtqvtvss
    hhhhhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >4x7dC (C:)
    dvqlvesggglvlscaasgsifsiyamgwyrqqrelvasissgggtnyadsvkgrftisg
    dnakntvylqmnslkpedtavyyckredysayappsgsrgrgtqv
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >4x7dD (D:)
    dvqlvesggglvqpggslrlscaasgsifsiyamgwyrqapgkqrelvasissgggtnya
    dsvkgrftisgdnakntvylqmnslkpedtavyyckredysayappsgsrgrgtqvtvss
    hhhhhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >4x7dD (D:)
    dvqlvesggglvqpggslrlscaasgsifsiyamgwyrqapgkqrelvasissgggtnya
    dsvkgrftisgdnakntvylqmnslkpedtavyyckredysayappsgsrgrgtqvtvss
    h