PDB entry 4wdz

View 4wdz on RCSB PDB site
Description: JC Polyomavirus VP1 five-fold pore mutant N221W
Class: viral protein
Keywords: beta-sandwich, jelly-roll, viral major capsid protein, five-fold pore, viral protein
Deposited on 2014-09-09, released 2015-02-18
The last revision prior to the SCOPe 2.08 freeze date was dated 2015-03-18, with a file datestamp of 2015-03-13.
Experiment type: XRAY
Resolution: 1.8 Å
R-factor: N/A
AEROSPACI score: 0.37 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Major capsid protein VP1
    Species: JC polyomavirus [TaxId:10632]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P03089 (Start-271)
      • engineered mutation (203)
    Domains in SCOPe 2.08: d4wdza_
  • Chain 'B':
    Compound: Major capsid protein VP1
    Species: JC polyomavirus [TaxId:10632]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P03089
      • engineered mutation (203)
    Domains in SCOPe 2.08: d4wdzb_
  • Chain 'C':
    Compound: Major capsid protein VP1
    Species: JC polyomavirus [TaxId:10632]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P03089
      • engineered mutation (203)
    Domains in SCOPe 2.08: d4wdzc_
  • Chain 'D':
    Compound: Major capsid protein VP1
    Species: JC polyomavirus [TaxId:10632]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P03089
      • engineered mutation (203)
    Domains in SCOPe 2.08: d4wdzd_
  • Chain 'E':
    Compound: Major capsid protein VP1
    Species: JC polyomavirus [TaxId:10632]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P03089
      • engineered mutation (203)
    Domains in SCOPe 2.08: d4wdze_
  • Heterogens: GOL, EDO, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4wdzA (A:)
gshmggvevlevktgvdsitevecfltpemgdpdehlrgfsksisisdtfesdspnrdml
pcysvariplpnlnedltcgnilmweavtlktevigvtslmnvhsngqathdngagkpvq
gtsfhffsvggealelqgvlfnyrtkypdgtifpknatvqsqvmntehkayldknkaypv
ecwvpdptrnentryfgtltggewvppvlhitntattvlldefgvgplckgdnlylsavd
vcgmftnrsgsqqwrglsryfkvqlrkrrvkn

    Sequence, based on observed residues (ATOM records): (download) 
    >4wdzA (A:)
vevlevktgvdsitevecfltpemgdpdehlrgfsksisisdtfesdspnrdmlpcysva
riplpnlnilmweavtlktevigvtslmnvhsngqathdngagkpvqgtsfhffsvggea
lelqgvlfnyrtkypdgtifpknatvqsqvmntehkayldknkaypvecwvpdptrnent
ryfgtltggewvppvlhitntattvlldefgvgplckgdnlylsavdvcgmftnrsgsqq
wrglsryfkvqlrkrrvkn

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4wdzB (B:)
gshmggvevlevktgvdsitevecfltpemgdpdehlrgfsksisisdtfesdspnrdml
pcysvariplpnlnedltcgnilmweavtlktevigvtslmnvhsngqathdngagkpvq
gtsfhffsvggealelqgvlfnyrtkypdgtifpknatvqsqvmntehkayldknkaypv
ecwvpdptrnentryfgtltggewvppvlhitntattvlldefgvgplckgdnlylsavd
vcgmftnrsgsqqwrglsryfkvqlrkrrvkn

    Sequence, based on observed residues (ATOM records): (download) 
    >4wdzB (B:)
vevlevktgvdsitevecfltpemgdpdehlrgfsksisisdtfesdspnrdmlpcysva
riplpnlnilmweavtlktevigvtslmnvhsngqathdngagkpvqgtsfhffsvggea
lelqgvlfnyrtkypdgtifpknatvqsqvmntehkayldknkaypvecwvpdptrnent
ryfgtltggewvppvlhitntattvlldefgvgplckgdnlylsavdvcgmftnrsgsqq
wrglsryfkvqlrkrrvk

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >4wdzC (C:)
gshmggvevlevktgvdsitevecfltpemgdpdehlrgfsksisisdtfesdspnrdml
pcysvariplpnlnedltcgnilmweavtlktevigvtslmnvhsngqathdngagkpvq
gtsfhffsvggealelqgvlfnyrtkypdgtifpknatvqsqvmntehkayldknkaypv
ecwvpdptrnentryfgtltggewvppvlhitntattvlldefgvgplckgdnlylsavd
vcgmftnrsgsqqwrglsryfkvqlrkrrvkn

    Sequence, based on observed residues (ATOM records): (download) 
    >4wdzC (C:)
evlevktgvdsitevecfltpemgdpdehlrgfsksisisdtfesdspnrdmlpcysvar
iplpnlnilmweavtlktevigvtslmnvhsngqathdngagkpvqgtsfhffsvggeal
elqgvlfnyrtkypdgtifpknatvqsqvmntehkayldknkaypvecwvpdptrnentr
yfgtltggewvppvlhitntattvlldefgvgplckgdnlylsavdvcgmftnrsgsqqw
rglsryfkvqlrkrrvk

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >4wdzD (D:)
gshmggvevlevktgvdsitevecfltpemgdpdehlrgfsksisisdtfesdspnrdml
pcysvariplpnlnedltcgnilmweavtlktevigvtslmnvhsngqathdngagkpvq
gtsfhffsvggealelqgvlfnyrtkypdgtifpknatvqsqvmntehkayldknkaypv
ecwvpdptrnentryfgtltggewvppvlhitntattvlldefgvgplckgdnlylsavd
vcgmftnrsgsqqwrglsryfkvqlrkrrvkn

    Sequence, based on observed residues (ATOM records): (download) 
    >4wdzD (D:)
vevlevktgvdsitevecfltpemgdpdehlrgfsksisisdtfesdspnrdmlpcysva
riplpnlnilmweavtlktevigvtslmnvhsngqathdngagkpvqgtsfhffsvggea
lelqgvlfnyrtkypdgtifpknatvqsqvmntehkayldknkaypvecwvpdptrnent
ryfgtltggewvppvlhitntattvlldefgvgplckgdnlylsavdvcgmftnrsgsqq
wrglsryfkvqlrkrrvk

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >4wdzE (E:)
gshmggvevlevktgvdsitevecfltpemgdpdehlrgfsksisisdtfesdspnrdml
pcysvariplpnlnedltcgnilmweavtlktevigvtslmnvhsngqathdngagkpvq
gtsfhffsvggealelqgvlfnyrtkypdgtifpknatvqsqvmntehkayldknkaypv
ecwvpdptrnentryfgtltggewvppvlhitntattvlldefgvgplckgdnlylsavd
vcgmftnrsgsqqwrglsryfkvqlrkrrvkn

    Sequence, based on observed residues (ATOM records): (download) 
    >4wdzE (E:)
vevlevktgvdsitevecfltpemgdpdehlrgfsksisisdtfesdspnrdmlpcysva
riplpnlnilmweavtlktevigvtslmnvhsngqathdngagkpvqgtsfhffsvggea
lelqgvlfnyrtkypdgtifpknatvqsqvmntehkayldknkaypvecwvpdptrnent
ryfgtltggewvppvlhitntattvlldefgvgplckgdnlylsavdvcgmftnrsgsqq
wrglsryfkvqlrkrrvk