PDB entry 4ucx

View 4ucx on RCSB PDB site
Description: Structure of the T18G small subunit mutant of D. fructosovorans NiFe- hydrogenase
Class: oxidoreductase
Keywords: oxidoreductase, nife-hydrogenase, t18g mutant
Deposited on 2014-12-05, released 2015-02-18
The last revision prior to the SCOPe 2.08 freeze date was dated 2019-11-20, with a file datestamp of 2019-11-15.
Experiment type: XRAY
Resolution: 1.95 Å
R-factor: N/A
AEROSPACI score: 0.32 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Hydrogenase (NiFe) small subunit HydA
    Species: DESULFOVIBRIO FRUCTOSIVORANS [TaxId:878]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P18187 (Start-263)
      • engineered mutation (17)
    Domains in SCOPe 2.08: d4ucxa_
  • Chain 'B':
    Compound: Hydrogenase (NiFe) small subunit HydA
    Species: DESULFOVIBRIO FRUCTOSIVORANS [TaxId:878]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P18187 (Start-263)
      • engineered mutation (17)
    Domains in SCOPe 2.08: d4ucxb_
  • Chain 'C':
    Compound: Hydrogenase (NiFe) small subunit HydA
    Species: DESULFOVIBRIO FRUCTOSIVORANS [TaxId:878]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P18187 (Start-263)
      • engineered mutation (17)
    Domains in SCOPe 2.08: d4ucxc_
  • Chain 'Q':
    Compound: Nickel-dependent hydrogenase large subunit
    Species: DESULFOVIBRIO FRUCTOSIVORANS [TaxId:878]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4ucxq_
  • Chain 'R':
    Compound: Nickel-dependent hydrogenase large subunit
    Species: DESULFOVIBRIO FRUCTOSIVORANS [TaxId:878]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4ucxr_
  • Chain 'S':
    Compound: Nickel-dependent hydrogenase large subunit
    Species: DESULFOVIBRIO FRUCTOSIVORANS [TaxId:878]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4ucxs_
  • Heterogens: SF4, F3S, GOL, FCO, NI, MG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4ucxA (A:)
ltakhrpsvvwlhnaecggcteaairtikpyidalildtisldyqetimaaageaaeaal
hqalegkdgyylvvegglptidggqwgmvaghpmiettkkaaakakgiicigtcsayggv
qkakpnpsqakgvsealgvktinipgcppnpinfvgavvhvltkgipdldengrpklfyg
elvhdncprlphfeasefapsfdseeakkgfclyelgckgpvtynncpkvlfnqvnwpvq
aghpclgcsepdfwdtmtpfyeqg

    Sequence, based on observed residues (ATOM records): (download) 
    >4ucxA (A:)
akhrpsvvwlhnaecggcteaairtikpyidalildtisldyqetimaaageaaeaalhq
alegkdgyylvvegglptidggqwgmvaghpmiettkkaaakakgiicigtcsayggvqk
akpnpsqakgvsealgvktinipgcppnpinfvgavvhvltkgipdldengrpklfygel
vhdncprlphfeasefapsfdseeakkgfclyelgckgpvtynncpkvlfnqvnwpvqag
hpclgcsepdfwdtmtpfyeqg

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4ucxB (B:)
ltakhrpsvvwlhnaecggcteaairtikpyidalildtisldyqetimaaageaaeaal
hqalegkdgyylvvegglptidggqwgmvaghpmiettkkaaakakgiicigtcsayggv
qkakpnpsqakgvsealgvktinipgcppnpinfvgavvhvltkgipdldengrpklfyg
elvhdncprlphfeasefapsfdseeakkgfclyelgckgpvtynncpkvlfnqvnwpvq
aghpclgcsepdfwdtmtpfyeqg

    Sequence, based on observed residues (ATOM records): (download) 
    >4ucxB (B:)
akhrpsvvwlhnaecggcteaairtikpyidalildtisldyqetimaaageaaeaalhq
alegkdgyylvvegglptidggqwgmvaghpmiettkkaaakakgiicigtcsayggvqk
akpnpsqakgvsealgvktinipgcppnpinfvgavvhvltkgipdldengrpklfygel
vhdncprlphfeasefapsfdseeakkgfclyelgckgpvtynncpkvlfnqvnwpvqag
hpclgcsepdfwdtmtpfyeqg

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >4ucxC (C:)
ltakhrpsvvwlhnaecggcteaairtikpyidalildtisldyqetimaaageaaeaal
hqalegkdgyylvvegglptidggqwgmvaghpmiettkkaaakakgiicigtcsayggv
qkakpnpsqakgvsealgvktinipgcppnpinfvgavvhvltkgipdldengrpklfyg
elvhdncprlphfeasefapsfdseeakkgfclyelgckgpvtynncpkvlfnqvnwpvq
aghpclgcsepdfwdtmtpfyeqg

    Sequence, based on observed residues (ATOM records): (download) 
    >4ucxC (C:)
hrpsvvwlhnaecggcteaairtikpyidalildtisldyqetimaaageaaeaalhqal
egkdgyylvvegglptidggqwgmvaghpmiettkkaaakakgiicigtcsayggvqkak
pnpsqakgvsealgvktinipgcppnpinfvgavvhvltkgipdldengrpklfygelvh
dncprlphfeasefapsfdseeakkgfclyelgckgpvtynncpkvlfnqvnwpvqaghp
clgcsepdfwdtmtpfyeqg

  • Chain 'Q':
    Sequence, based on SEQRES records: (download) 
    >4ucxQ (Q:)
aswshpqfekgasgaaeskptpqstftgpivvdpitrieghlrimvevengkvkdawsss
qlfrgleiilkgrdprdaqhftqracgvctyvhalassrcvddavkvsipanarmmrnlv
masqylhdhlvhfyhlhaldwvdvtaalkadpnkaaklaasiaparpgnsakalkavqdk
lkafvesgqlgiftnayflgghkayylppevdliatahylealhmqvkaasamailggkn
phtqftvvggcsnyqgltkdplanylalskevcqfvnecyipdllavagfykdwggiggt
snylafgefatddsspekhlatsqfpsgvitgrdlgkvdnvdlgaiyedvkyswyapggd
gkhpydgvtdpkytklddkdhyswmkaprykgkamevgplartfiayakgqpdfkkvvdm
vlgklsvpatalhstlgrtaargietaivcanmekwikemadsgakdntlcakwempees
kgvgladaprgalshwirikgkkidnfqlvvpstwnlgprgaqgdkspveealigtpiad
pkrpveilrtvhafdpciacgvh

    Sequence, based on observed residues (ATOM records): (download) 
    >4ucxQ (Q:)
ptpqstftgpivvdpitrieghlrimvevengkvkdawsssqlfrgleiilkgrdprdaq
hftqracgvctyvhalassrcvddavkvsipanarmmrnlvmasqylhdhlvhfyhlhal
dwvdvtaalkadpnkaaklaasiaparpgnsakalkavqdklkafvesgqlgiftnayfl
gghkayylppevdliatahylealhmqvkaasamailggknphtqftvvggcsnyqgltk
dplanylalskevcqfvnecyipdllavagfykdwggiggtsnylafgefatddsspekh
latsqfpsgvitgrdlgkvdnvdlgaiyedvkyswyapggdgkhpydgvtdpkytklddk
dhyswmkaprykgkamevgplartfiayakgqpdfkkvvdmvlgklsvpatalhstlgrt
aargietaivcanmekwikemadsgakdntlcakwempeeskgvgladaprgalshwiri
kgkkidnfqlvvpstwnlgprgaqgdkspveealigtpiadpkrpveilrtvhafdpcia
cgvh

  • Chain 'R':
    Sequence, based on SEQRES records: (download) 
    >4ucxR (R:)
aswshpqfekgasgaaeskptpqstftgpivvdpitrieghlrimvevengkvkdawsss
qlfrgleiilkgrdprdaqhftqracgvctyvhalassrcvddavkvsipanarmmrnlv
masqylhdhlvhfyhlhaldwvdvtaalkadpnkaaklaasiaparpgnsakalkavqdk
lkafvesgqlgiftnayflgghkayylppevdliatahylealhmqvkaasamailggkn
phtqftvvggcsnyqgltkdplanylalskevcqfvnecyipdllavagfykdwggiggt
snylafgefatddsspekhlatsqfpsgvitgrdlgkvdnvdlgaiyedvkyswyapggd
gkhpydgvtdpkytklddkdhyswmkaprykgkamevgplartfiayakgqpdfkkvvdm
vlgklsvpatalhstlgrtaargietaivcanmekwikemadsgakdntlcakwempees
kgvgladaprgalshwirikgkkidnfqlvvpstwnlgprgaqgdkspveealigtpiad
pkrpveilrtvhafdpciacgvh

    Sequence, based on observed residues (ATOM records): (download) 
    >4ucxR (R:)
kptpqstftgpivvdpitrieghlrimvevengkvkdawsssqlfrgleiilkgrdprda
qhftqracgvctyvhalassrcvddavkvsipanarmmrnlvmasqylhdhlvhfyhlha
ldwvdvtaalkadpnkaaklaasiaparpgnsakalkavqdklkafvesgqlgiftnayf
lgghkayylppevdliatahylealhmqvkaasamailggknphtqftvvggcsnyqglt
kdplanylalskevcqfvnecyipdllavagfykdwggiggtsnylafgefatddsspek
hlatsqfpsgvitgrdlgkvdnvdlgaiyedvkyswyapggdgkhpydgvtdpkytkldd
kdhyswmkaprykgkamevgplartfiayakgqpdfkkvvdmvlgklsvpatalhstlgr
taargietaivcanmekwikemadsgakdntlcakwempeeskgvgladaprgalshwir
ikgkkidnfqlvvpstwnlgprgaqgdkspveealigtpiadpkrpveilrtvhafdpci
acgvh

  • Chain 'S':
    Sequence, based on SEQRES records: (download) 
    >4ucxS (S:)
aswshpqfekgasgaaeskptpqstftgpivvdpitrieghlrimvevengkvkdawsss
qlfrgleiilkgrdprdaqhftqracgvctyvhalassrcvddavkvsipanarmmrnlv
masqylhdhlvhfyhlhaldwvdvtaalkadpnkaaklaasiaparpgnsakalkavqdk
lkafvesgqlgiftnayflgghkayylppevdliatahylealhmqvkaasamailggkn
phtqftvvggcsnyqgltkdplanylalskevcqfvnecyipdllavagfykdwggiggt
snylafgefatddsspekhlatsqfpsgvitgrdlgkvdnvdlgaiyedvkyswyapggd
gkhpydgvtdpkytklddkdhyswmkaprykgkamevgplartfiayakgqpdfkkvvdm
vlgklsvpatalhstlgrtaargietaivcanmekwikemadsgakdntlcakwempees
kgvgladaprgalshwirikgkkidnfqlvvpstwnlgprgaqgdkspveealigtpiad
pkrpveilrtvhafdpciacgvh

    Sequence, based on observed residues (ATOM records): (download) 
    >4ucxS (S:)
ptpqstftgpivvdpitrieghlrimvevengkvkdawsssqlfrgleiilkgrdprdaq
hftqracgvctyvhalassrcvddavkvsipanarmmrnlvmasqylhdhlvhfyhlhal
dwvdvtaalkadpnkaaklaasiaparpgnsakalkavqdklkafvesgqlgiftnayfl
gghkayylppevdliatahylealhmqvkaasamailggknphtqftvvggcsnyqgltk
dplanylalskevcqfvnecyipdllavagfykdwggiggtsnylafgefatddsspekh
latsqfpsgvitgrdlgkvdnvdlgaiyedvkyswyapggdgkhpydgvtdpkytklddk
dhyswmkaprykgkamevgplartfiayakgqpdfkkvvdmvlgklsvpatalhstlgrt
aargietaivcanmekwikemadsgakdntlcakwempeeskgvgladaprgalshwiri
kgkkidnfqlvvpstwnlgprgaqgdkspveealigtpiadpkrpveilrtvhafdpcia
cgvh