PDB entry 4rk1

View 4rk1 on RCSB PDB site
Description: Crystal structure of LacI family transcriptional regulator from Enterococcus faecium, Target EFI-512930, with bound ribose
Class: transcription regulator
Keywords: sugar binding, transcription regulation, Enzyme Function Initiative, EFI, structural genomics, transcriptional factor, D-glucose, TRANSCRIPTION REGULATOR
Deposited on 2014-10-11, released 2014-10-29
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-07-29, with a file datestamp of 2020-07-04.
Experiment type: XRAY
Resolution: 1.9 Å
R-factor: N/A
AEROSPACI score: 0.43 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Ribose transcriptional regulator
    Species: Enterococcus faecium DO [TaxId:333849]
    Gene: rbsR, HMPREF0351_10453
    Database cross-references and differences (RAF-indexed):
    • Uniprot I3TZ89 (Start-279)
      • conflict (269)
    Domains in SCOPe 2.08: d4rk1a_
  • Chain 'B':
    Compound: Ribose transcriptional regulator
    Species: Enterococcus faecium DO [TaxId:333849]
    Gene: rbsR, HMPREF0351_10453
    Database cross-references and differences (RAF-indexed):
    • Uniprot I3TZ89 (Start-279)
      • conflict (269)
    Domains in SCOPe 2.08: d4rk1b_
  • Chain 'C':
    Compound: Ribose transcriptional regulator
    Species: Enterococcus faecium DO [TaxId:333849]
    Gene: rbsR, HMPREF0351_10453
    Database cross-references and differences (RAF-indexed):
    • Uniprot I3TZ89 (Start-279)
      • conflict (269)
    Domains in SCOPe 2.08: d4rk1c_
  • Chain 'D':
    Compound: Ribose transcriptional regulator
    Species: Enterococcus faecium DO [TaxId:333849]
    Gene: rbsR, HMPREF0351_10453
    Database cross-references and differences (RAF-indexed):
    • Uniprot I3TZ89 (Start-279)
      • conflict (269)
    Domains in SCOPe 2.08: d4rk1d_
  • Chain 'E':
    Compound: Ribose transcriptional regulator
    Species: Enterococcus faecium DO [TaxId:333849]
    Gene: rbsR, HMPREF0351_10453
    Database cross-references and differences (RAF-indexed):
    • Uniprot I3TZ89 (Start-279)
      • conflict (269)
    Domains in SCOPe 2.08: d4rk1e_
  • Chain 'F':
    Compound: Ribose transcriptional regulator
    Species: Enterococcus faecium DO [TaxId:333849]
    Gene: rbsR, HMPREF0351_10453
    Database cross-references and differences (RAF-indexed):
    • Uniprot I3TZ89 (Start-279)
      • conflict (269)
    Domains in SCOPe 2.08: d4rk1f_
  • Heterogens: RIB, CL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4rk1A (A:)
smitketktigvlvpditnpffstlmrgiedilykqnfvtilcnadsdhqkeieylaelt
rrgvdgfiiatsavstdainenlkkqgrpfivldqkksegfsdavrtddfrggylagmhl
lslghqtialvypenppenvhariegfksaldvyqiphdqlillptqfskqggyqitael
ldsaatgvfalndelafglyrgleeagksipedysiigydnidmceyikpklttiaqpif
elgqtsakllldriqfpekeweekrlpvrfekrfstaplk

    Sequence, based on observed residues (ATOM records): (download) 
    >4rk1A (A:)
ktigvlvpditnpffstlmrgiedilykqnfvtilcnadieylaeltrrgvdgfiiatsa
vstdainenlkkqgrpfivldqkksegfsdavrtddfrggylagmhllslghqtialvyp
enppenvhariegfksaldvyqiphdqlillptqfskqggyqitaelldsaatgvfalnd
elafglyrgleeagksipedysiigydnidmceyikpklttiaqpifelgqtsakllldr
iqfpekeweekrlpvrfekrfstaplk

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4rk1B (B:)
smitketktigvlvpditnpffstlmrgiedilykqnfvtilcnadsdhqkeieylaelt
rrgvdgfiiatsavstdainenlkkqgrpfivldqkksegfsdavrtddfrggylagmhl
lslghqtialvypenppenvhariegfksaldvyqiphdqlillptqfskqggyqitael
ldsaatgvfalndelafglyrgleeagksipedysiigydnidmceyikpklttiaqpif
elgqtsakllldriqfpekeweekrlpvrfekrfstaplk

    Sequence, based on observed residues (ATOM records): (download) 
    >4rk1B (B:)
ktigvlvpditnpffstlmrgiedilykqnfvtilcnadsieylaeltrrgvdgfiiats
avstdainenlkkqgrpfivldqkksegfsdavrtddfrggylagmhllslghqtialvy
penppenvhariegfksaldvyqiphdqlillptqfskqggyqitaelldsaatgvfaln
delafglyrgleeagksipedysiigydnidmceyikpklttiaqpifelgqtsakllld
riqfpekeweekrlpvrfekrfstaplk

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >4rk1C (C:)
smitketktigvlvpditnpffstlmrgiedilykqnfvtilcnadsdhqkeieylaelt
rrgvdgfiiatsavstdainenlkkqgrpfivldqkksegfsdavrtddfrggylagmhl
lslghqtialvypenppenvhariegfksaldvyqiphdqlillptqfskqggyqitael
ldsaatgvfalndelafglyrgleeagksipedysiigydnidmceyikpklttiaqpif
elgqtsakllldriqfpekeweekrlpvrfekrfstaplk

    Sequence, based on observed residues (ATOM records): (download) 
    >4rk1C (C:)
ktigvlvpditnpffstlmrgiedilykqnfvtilcnadsieylaeltrrgvdgfiiats
avstdainenlkkqgrpfivldqkksegfsdavrtddfrggylagmhllslghqtialvy
penppenvhariegfksaldvyqiphdqlillptqfskqggyqitaelldsaatgvfaln
delafglyrgleeagksipedysiigydnidmceyikpklttiaqpifelgqtsakllld
riqfpekeweekrlpvrfekrfstaplk

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >4rk1D (D:)
smitketktigvlvpditnpffstlmrgiedilykqnfvtilcnadsdhqkeieylaelt
rrgvdgfiiatsavstdainenlkkqgrpfivldqkksegfsdavrtddfrggylagmhl
lslghqtialvypenppenvhariegfksaldvyqiphdqlillptqfskqggyqitael
ldsaatgvfalndelafglyrgleeagksipedysiigydnidmceyikpklttiaqpif
elgqtsakllldriqfpekeweekrlpvrfekrfstaplk

    Sequence, based on observed residues (ATOM records): (download) 
    >4rk1D (D:)
ktigvlvpditnpffstlmrgiedilykqnfvtilcnadseieylaeltrrgvdgfiiat
savstdainenlkkqgrpfivldqkksegfsdavrtddfrggylagmhllslghqtialv
ypenppenvhariegfksaldvyqiphdqlillptqfskqggyqitaelldsaatgvfal
ndelafglyrgleeagksipedysiigydnidmceyikpklttiaqpifelgqtsaklll
driqfpekeweekrlpvrfekrfstaplk

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >4rk1E (E:)
smitketktigvlvpditnpffstlmrgiedilykqnfvtilcnadsdhqkeieylaelt
rrgvdgfiiatsavstdainenlkkqgrpfivldqkksegfsdavrtddfrggylagmhl
lslghqtialvypenppenvhariegfksaldvyqiphdqlillptqfskqggyqitael
ldsaatgvfalndelafglyrgleeagksipedysiigydnidmceyikpklttiaqpif
elgqtsakllldriqfpekeweekrlpvrfekrfstaplk

    Sequence, based on observed residues (ATOM records): (download) 
    >4rk1E (E:)
ktigvlvpditnpffstlmrgiedilykqnfvtilcnadsieylaeltrrgvdgfiiats
avstdainenlkkqgrpfivldqkksegfsdavrtddfrggylagmhllslghqtialvy
penppenvhariegfksaldvyqiphdqlillptqfskqggyqitaelldsaatgvfaln
delafglyrgleeagksipedysiigydnidmceyikpklttiaqpifelgqtsakllld
riqfpekeweekrlpvrfekrfstaplk

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >4rk1F (F:)
smitketktigvlvpditnpffstlmrgiedilykqnfvtilcnadsdhqkeieylaelt
rrgvdgfiiatsavstdainenlkkqgrpfivldqkksegfsdavrtddfrggylagmhl
lslghqtialvypenppenvhariegfksaldvyqiphdqlillptqfskqggyqitael
ldsaatgvfalndelafglyrgleeagksipedysiigydnidmceyikpklttiaqpif
elgqtsakllldriqfpekeweekrlpvrfekrfstaplk

    Sequence, based on observed residues (ATOM records): (download) 
    >4rk1F (F:)
ktigvlvpditnpffstlmrgiedilykqnfvtilcnadsieylaeltrrgvdgfiiats
avstdainenlkkqgrpfivldqkksegfsdavrtddfrggylagmhllslghqtialvy
penppenvhariegfksaldvyqiphdqlillptqfskqggyqitaelldsaatgvfaln
delafglyrgleeagksipedysiigydnidmceyikpklttiaqpifelgqtsakllld
riqfpekeweekrlpvrfekrfstaplk