PDB entry 4rgk

View 4rgk on RCSB PDB site
Description: Crystal Structure of Putative Phytanoyl-CoA Dioxygenase Family Protein YbiU from Yersinia pestis
Class: structural genomics, unknown function
Keywords: Chicago Center for Functional Annotation, Structural Genomics, PSI-Biology, Midwest Center for Structural Genomics, MCSG, alpha-beta fold, beta-barrel, UNKNOWN FUNCTION
Deposited on 2014-09-30, released 2014-12-31
The last revision prior to the SCOPe 2.06 freeze date was dated 2014-12-31, with a file datestamp of 2014-12-26.
Experiment type: XRAY
Resolution: 2.15 Å
R-factor: 0.194
AEROSPACI score: 0.33 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Uncharacterized protein
    Species: Yersinia pestis [TaxId:632]
    Gene: y1506, YPO2976, YP_2601
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q7CJE8 (3-End)
      • expression tag (1-2)
    Domains in SCOPe 2.06: d4rgka1, d4rgka2
  • Heterogens: SO4, GOL, EDO, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4rgkA (A:)
snamaslhiddipaaikavkqqlrqalpdyqqvfqaveenirqqvmeirrnlaegknpvp
qlhaddiingkvteeqkaqikqrgccailgvfpqekatawnreigdyldrnnfverlkna
aednyfgtlaaskpqiygiywstpqvearqdkrmqavqiflnnlwqtesngkqhfdanrv
vtyadrtrrrppkssslglsphvdggsierwldenfrhvyrhvfsgqwqkydpfaaegrp
evrefpspavcsmfrtfqgwtaltpqrthagtlnvipianamayillralqddvadddlc
gaapgralsaseqwhpllmeaispipdleagdtvfwhcdvihsvenehngefdsnvmyia
aapwceknaaylprqlasfidgrsppdfaaddfevdfigratiknlteigkqqlgitd

    Sequence, based on observed residues (ATOM records): (download) 
    >4rgkA (A:)
namaslhiddipaaikavkqqlrqalpdyqqvfqaveenirqqvmeirrnlaegknpvpq
lhaddiingkvteeqkaqikqrgccailgvfpqekatawnreigdyldrnnfverlknaa
ednyfgtlaaskpqiygiywstpqvearqdkrmqavqiflnnlwqtesngkqhfdanrvv
tyadrtrrrppkssslglsphvdggsierwldenfrhvyrhvfsgqwqkydpfaaegrpe
vrefpspavcsmfrtfqgwtaltpqrthagtlnvipianamayillralqddvadddlcg
aapgralsaseqwhpllmeaispipdleagdtvfwhcdvihsvenehngefdsnvmyiaa
apwceknaaylprqlasfidgrsppdfaaddfevdfigratiknlteigkqqlgit