PDB entry 4qz8
View 4qz8 on RCSB PDB site
Description: Mouse Tdt in complex with a DSB substrate, C-G base pair
Class: transferase/DNA
Keywords: Terminal deoxynucleotidyltransferase, nucleus, TRANSFERASE-DNA complex
Deposited on
2014-07-27, released
2015-06-10
The last revision prior to the SCOPe 2.05 freeze date was dated
2015-06-10, with a file datestamp of
2015-06-05.
Experiment type: XRAY
Resolution: 2.7 Å
R-factor: N/A
AEROSPACI score: 0.19
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: DNA nucleotidylexotransferase
Species: Mus musculus [TaxId:10090]
Gene: DNTT, TDT
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.05: d4qz8a1, d4qz8a2, d4qz8a3 - Chain 'D':
Compound: 5'-d(*ap*ap*ap*ap*ap*c)-3'
- Chain 'T':
Compound: 5'-d(*tp*tp*tp*tp*tp*gp*g)-3'
- Chain 'U':
Compound: 5'-d(*ap*ap*ap*ap*ap*c)-3'
- Heterogens: MG, NA, DCT, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>4qz8A (A:)
mgsshhhhhhssglvprgshmspspvpgsqnvpapavkkisqyacqrrttlnnynqlftd
aldilaendelrenegsclafmrassvlkslpfpitsmkdtegipclgdkvksiiegiie
dgesseakavlnderyksfklftsvfgvglktaekwfrmgfrtlskiqsdkslrftqmqk
agflyyedlvscvnrpeaeavsmlvkeavvtflpdalvtmtggfrrgkmtghdvdflits
peatedeeqqllhkvtdfwkqqglllycdilestfekfkqpsrkvdaldhfqkcflilkl
dhgrvhseksgqqegkgwkairvdlvmcpydrrafallgwtgsrqferdlrryatherkm
mldnhalydrtkrvfleaeseeeifahlgldyiepwerna
Sequence, based on observed residues (ATOM records): (download)
>4qz8A (A:)
kkisqyacqrrttlnnynqlftdaldilaendelrenegsclafmrassvlkslpfpits
mkdtegipclgdkvksiiegiiedgesseakavlnderyksfklftsvfgvglktaekwf
rmgfrtlskiqsdkslrftqmqkagflyyedlvscvnrpeaeavsmlvkeavvtflpdal
vtmtggfrrgkmtghdvdflitspeatedeeqqllhkvtdfwkqqglllycdilestfva
ldhfqkcflilkldhgrvhsgkgwkairvdlvmcpydrrafallgwtgsrqferdlrrya
therkmmldnhalydrtkrvfleaeseeeifahlgldyiepwerna
- Chain 'D':
No sequence available.
- Chain 'T':
No sequence available.
- Chain 'U':
No sequence available.