PDB entry 4qdq

View 4qdq on RCSB PDB site
Description: Physical basis for Nrp2 ligand binding
Class: cell adhesion
Keywords: coagulation factor domain, discoidin domain, receptor, VEGF-C, membrane, CELL ADHESION
Deposited on 2014-05-14, released 2015-04-15
The last revision prior to the SCOPe 2.05 freeze date was dated 2015-04-15, with a file datestamp of 2015-04-10.
Experiment type: XRAY
Resolution: 1.95 Å
R-factor: N/A
AEROSPACI score: 0.32 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Neuropilin-2
    Species: Homo sapiens [TaxId:9606]
    Gene: NRP2, VEGF165R2
    Database cross-references and differences (RAF-indexed):
    • Uniprot O60462 (4-323)
      • expression tag (324-328)
    Domains in SCOPe 2.05: d4qdqa1, d4qdqa2
  • Chain 'B':
    Compound: Neuropilin-2
    Species: Homo sapiens [TaxId:9606]
    Gene: NRP2, VEGF165R2
    Database cross-references and differences (RAF-indexed):
    • Uniprot O60462 (4-323)
      • expression tag (324-328)
    Domains in SCOPe 2.05: d4qdqb1, d4qdqb2
  • Heterogens: GOL, SO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4qdqA (A:)
gshmqcnvplgmesgrianeqisasstysdgrwtpqqsrlhgddngwtpnldsnkeylqv
dlrfltmltaiatqgaisretqngyyvksyklevstngedwmvyrhgknhkvfqanndat
evvlnklhaplltrfvrirpqtwhsgialrlelfgcrvtdapcsnmlgmlsgliadsqis
asstqeylwspsaarlvssrsgwfpripqaqpgeewlqvdlgtpktvkgviiqgarggds
itavearafvrkfkvsyslngkdweyiqdprtqqpklfegnmhydtpdirrfdpipaqyv
rvyperwspagigmrlevlgcdwtsiirr

    Sequence, based on observed residues (ATOM records): (download) 
    >4qdqA (A:)
qcnvplgmesgrianeqisasstysdgrwtpqqsrlhgddngwtpnldsnkeylqvdlrf
ltmltaiatqgaisretqngyyvksyklevstngedwmvyrhgknhkvfqanndatevvl
nklhaplltrfvrirpqtwhsgialrlelfgcrvtdapcsnmlgmlsgliadsqisasst
qeylwspsaarlvssrsgwfpripqaqpgeewlqvdlgtpktvkgviiqgararafvrkf
kvsyslngkdweyiqdprtqqpklfegnmhydtpdirrfdpipaqyvrvyperwspagig
mrlevlgcdwtsiirr

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4qdqB (B:)
gshmqcnvplgmesgrianeqisasstysdgrwtpqqsrlhgddngwtpnldsnkeylqv
dlrfltmltaiatqgaisretqngyyvksyklevstngedwmvyrhgknhkvfqanndat
evvlnklhaplltrfvrirpqtwhsgialrlelfgcrvtdapcsnmlgmlsgliadsqis
asstqeylwspsaarlvssrsgwfpripqaqpgeewlqvdlgtpktvkgviiqgarggds
itavearafvrkfkvsyslngkdweyiqdprtqqpklfegnmhydtpdirrfdpipaqyv
rvyperwspagigmrlevlgcdwtsiirr

    Sequence, based on observed residues (ATOM records): (download) 
    >4qdqB (B:)
qcnvplgmesgrianeqisasstysdgrwtpqqsrlhgddngwtpnldsnkeylqvdlrf
ltmltaiatqgaisretqngyyvksyklevstngedwmvyrhgknhkvfqanndatevvl
nklhaplltrfvrirpqtwhsgialrlelfgcrvtdapcsnmlgmlsgliadsqisasst
qeylwspsaarlvssrsgwfpripqaqpgeewlqvdlgtpktvkgviiqgararafvrkf
kvsyslngkdweyiqdprtqqpklfegnmhydtpdirrfdpipaqyvrvyperwspagig
mrlevlgcdwtsiirr