PDB entry 4pph

View 4pph on RCSB PDB site
Description: Crystal structure of conglutin gamma, a unique basic 7S globulin from lupine seeds
Class: plant protein
Keywords: plant protein, lupine cotyledons, non-storage role, 7S basic globulin, glycoside-hydrolase-inhibitor-like protein, apigenin glycosides, N-linked glycosylation, insulin
Deposited on 2014-02-27, released 2015-02-11
The last revision prior to the SCOPe 2.05 freeze date was dated 2015-02-25, with a file datestamp of 2015-02-20.
Experiment type: XRAY
Resolution: 2.01 Å
R-factor: 0.146
AEROSPACI score: 0.41 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Conglutin gamma
    Species: Lupinus angustifolius [TaxId:3871]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d4ppha_
  • Chain 'B':
    Compound: Conglutin gamma
    Species: Lupinus angustifolius [TaxId:3871]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d4pphb_
  • Chain 'C':
    Compound: Conglutin gamma
    Species: Lupinus angustifolius [TaxId:3871]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d4pphc_
  • Chain 'D':
    Compound: Conglutin gamma
    Species: Lupinus angustifolius [TaxId:3871]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d4pphd_
  • Chain 'E':
    Compound: Conglutin gamma
    Species: Lupinus angustifolius [TaxId:3871]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d4pphe_
  • Chain 'F':
    Compound: Conglutin gamma
    Species: Lupinus angustifolius [TaxId:3871]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d4pphf_
  • Heterogens: EDO, NAG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >4pphA (A:)
    lyhnsqptsskpnllvlpvqedastglhwanihkrtplmqvpllldlngkhlwvtcsqhy
    ssstyqapfchstqcsranthqcftctdstttrpgchnntcgllssnpvtqesglgelaq
    dvlaihsthgsklgpmvkvpqflfscapsflaqkglpnnvqgalglgqapislqnqlfsh
    fglkrqfsvclsrystsngailfgdindpnnnnyihnsldvlhdlvytpltiskqgeyfi
    qvnairvnkhlviptknpfispsstsyhgsgeiggalittthpytvlshsifevftqvfa
    nnmpkqaqvkavgpfglcydsrkisggapsvdlildkndavwrissenfmvqaqdgvscl
    gfvdggvharagialgahhleenlvvfdlersrvgfnsnslksygktcsnlfdlnnp
    

    Sequence, based on observed residues (ATOM records): (download)
    >4pphA (A:)
    kpnllvlpvqedastglhwanihkrtplmqvpllldlngkhlwvtcsqhyssstyqapfc
    hstqcsranthqcftctdstttrpgchnntcgllssnpvtqesglgelaqdvlaihsthg
    sklgpmvkvpqflfscapsflaqkglpnnvqgalglgqapislqnqlfshfglkrqfsvc
    lsrystsngailfgdindpnnnnyihnsldvlhdlvytpltiskqgeyfiqvnairvnkh
    lvipteiggalittthpytvlshsifevftqvfannmpkqaqvkavgpfglcydsrkisg
    gapsvdlildkndavwrissenfmvqaqdgvsclgfvdggvharagialgahhleenlvv
    fdlersrvgfnsnslksygktcsnlfdlnn
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >4pphB (B:)
    lyhnsqptsskpnllvlpvqedastglhwanihkrtplmqvpllldlngkhlwvtcsqhy
    ssstyqapfchstqcsranthqcftctdstttrpgchnntcgllssnpvtqesglgelaq
    dvlaihsthgsklgpmvkvpqflfscapsflaqkglpnnvqgalglgqapislqnqlfsh
    fglkrqfsvclsrystsngailfgdindpnnnnyihnsldvlhdlvytpltiskqgeyfi
    qvnairvnkhlviptknpfispsstsyhgsgeiggalittthpytvlshsifevftqvfa
    nnmpkqaqvkavgpfglcydsrkisggapsvdlildkndavwrissenfmvqaqdgvscl
    gfvdggvharagialgahhleenlvvfdlersrvgfnsnslksygktcsnlfdlnnp
    

    Sequence, based on observed residues (ATOM records): (download)
    >4pphB (B:)
    kpnllvlpvqedastglhwanihkrtplmqvpllldlngkhlwvtcsqhyssstyqapfc
    hstqcsranthqcftctdstttrpgchnntcgllssnpvtqesglgelaqdvlaihsthg
    sklgpmvkvpqflfscapsflaqkglpnnvqgalglgqapislqnqlfshfglkrqfsvc
    lsrystsngailfgdindpnnnnyihnsldvlhdlvytpltiskqgeyfiqvnairvnkh
    lviptgeiggalittthpytvlshsifevftqvfannmpkqaqvkavgpfglcydsrkis
    ggapsvdlildkndavwrissenfmvqaqdgvsclgfvdggvharagialgahhleenlv
    vfdlersrvgfnsnslksygktcsnlfdlnn
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >4pphC (C:)
    lyhnsqptsskpnllvlpvqedastglhwanihkrtplmqvpllldlngkhlwvtcsqhy
    ssstyqapfchstqcsranthqcftctdstttrpgchnntcgllssnpvtqesglgelaq
    dvlaihsthgsklgpmvkvpqflfscapsflaqkglpnnvqgalglgqapislqnqlfsh
    fglkrqfsvclsrystsngailfgdindpnnnnyihnsldvlhdlvytpltiskqgeyfi
    qvnairvnkhlviptknpfispsstsyhgsgeiggalittthpytvlshsifevftqvfa
    nnmpkqaqvkavgpfglcydsrkisggapsvdlildkndavwrissenfmvqaqdgvscl
    gfvdggvharagialgahhleenlvvfdlersrvgfnsnslksygktcsnlfdlnnp
    

    Sequence, based on observed residues (ATOM records): (download)
    >4pphC (C:)
    kpnllvlpvqedastglhwanihkrtplmqvpllldlngkhlwvtcsqhyssstyqapfc
    hstqcsranthqcftctdstttrpgchnntcgllssnpvtqesglgelaqdvlaihsthg
    sklgpmvkvpqflfscapsflaqkglpnnvqgalglgqapislqnqlfshfglkrqfsvc
    lsrystsngailfgdindpnnnnyihnsldvlhdlvytpltiskqgeyfiqvnairvnkh
    lviptgeiggalittthpytvlshsifevftqvfannmpkqaqvkavgpfglcydsrkis
    ggapsvdlildkndavwrissenfmvqaqdgvsclgfvdggvharagialgahhleenlv
    vfdlersrvgfnsnslksygktcsnlfdlnnp
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >4pphD (D:)
    lyhnsqptsskpnllvlpvqedastglhwanihkrtplmqvpllldlngkhlwvtcsqhy
    ssstyqapfchstqcsranthqcftctdstttrpgchnntcgllssnpvtqesglgelaq
    dvlaihsthgsklgpmvkvpqflfscapsflaqkglpnnvqgalglgqapislqnqlfsh
    fglkrqfsvclsrystsngailfgdindpnnnnyihnsldvlhdlvytpltiskqgeyfi
    qvnairvnkhlviptknpfispsstsyhgsgeiggalittthpytvlshsifevftqvfa
    nnmpkqaqvkavgpfglcydsrkisggapsvdlildkndavwrissenfmvqaqdgvscl
    gfvdggvharagialgahhleenlvvfdlersrvgfnsnslksygktcsnlfdlnnp
    

    Sequence, based on observed residues (ATOM records): (download)
    >4pphD (D:)
    skpnllvlpvqedastglhwanihkrtplmqvpllldlngkhlwvtcsqhyssstyqapf
    chstqcsranthqcftctdstttrpgchnntcgllssnpvtqesglgelaqdvlaihsth
    gsklgpmvkvpqflfscapsflaqkglpnnvqgalglgqapislqnqlfshfglkrqfsv
    clsrystsngailfgdindpnnnnyihnsldvlhdlvytpltiskqgeyfiqvnairvnk
    hlvipteiggalittthpytvlshsifevftqvfannmpkqaqvkavgpfglcydsrkis
    ggapsvdlildkndavwrissenfmvqaqdgvsclgfvdggvharagialgahhleenlv
    vfdlersrvgfnsnslksygktcsnlfdlnnp
    

  • Chain 'E':
    Sequence, based on SEQRES records: (download)
    >4pphE (E:)
    lyhnsqptsskpnllvlpvqedastglhwanihkrtplmqvpllldlngkhlwvtcsqhy
    ssstyqapfchstqcsranthqcftctdstttrpgchnntcgllssnpvtqesglgelaq
    dvlaihsthgsklgpmvkvpqflfscapsflaqkglpnnvqgalglgqapislqnqlfsh
    fglkrqfsvclsrystsngailfgdindpnnnnyihnsldvlhdlvytpltiskqgeyfi
    qvnairvnkhlviptknpfispsstsyhgsgeiggalittthpytvlshsifevftqvfa
    nnmpkqaqvkavgpfglcydsrkisggapsvdlildkndavwrissenfmvqaqdgvscl
    gfvdggvharagialgahhleenlvvfdlersrvgfnsnslksygktcsnlfdlnnp
    

    Sequence, based on observed residues (ATOM records): (download)
    >4pphE (E:)
    kpnllvlpvqedastglhwanihkrtplmqvpllldlngkhlwvtcsqhyssstyqapfc
    hstqcsranthqcftctdstttrpgchnntcgllssnpvtqesglgelaqdvlaihsthg
    sklgpmvkvpqflfscapsflaqkglpnnvqgalglgqapislqnqlfshfglkrqfsvc
    lsrystsngailfgdindpnnnnyihnsldvlhdlvytpltiskqgeyfiqvnairvnkh
    lviptgeiggalittthpytvlshsifevftqvfannmpkqaqvkavgpfglcydsrkis
    ggapsvdlildkndavwrissenfmvqaqdgvsclgfvdggvharagialgahhleenlv
    vfdlersrvgfnsnslksygktcsnlfdlnn
    

  • Chain 'F':
    Sequence, based on SEQRES records: (download)
    >4pphF (F:)
    lyhnsqptsskpnllvlpvqedastglhwanihkrtplmqvpllldlngkhlwvtcsqhy
    ssstyqapfchstqcsranthqcftctdstttrpgchnntcgllssnpvtqesglgelaq
    dvlaihsthgsklgpmvkvpqflfscapsflaqkglpnnvqgalglgqapislqnqlfsh
    fglkrqfsvclsrystsngailfgdindpnnnnyihnsldvlhdlvytpltiskqgeyfi
    qvnairvnkhlviptknpfispsstsyhgsgeiggalittthpytvlshsifevftqvfa
    nnmpkqaqvkavgpfglcydsrkisggapsvdlildkndavwrissenfmvqaqdgvscl
    gfvdggvharagialgahhleenlvvfdlersrvgfnsnslksygktcsnlfdlnnp
    

    Sequence, based on observed residues (ATOM records): (download)
    >4pphF (F:)
    skpnllvlpvqedastglhwanihkrtplmqvpllldlngkhlwvtcsqhyssstyqapf
    chstqcsranthqcftctdstttrpgchnntcgllssnpvtqesglgelaqdvlaihsth
    gsklgpmvkvpqflfscapsflaqkglpnnvqgalglgqapislqnqlfshfglkrqfsv
    clsrystsngailfgdindpnnnnyihnsldvlhdlvytpltiskqgeyfiqvnairvnk
    hlviptgeiggalittthpytvlshsifevftqvfannmpkqaqvkavgpfglcydsrki
    sggapsvdlildkndavwrissenfmvqaqdgvsclgfvdggvharagialgahhleenl
    vvfdlersrvgfnsnslksygktcsnlfdlnn