PDB entry 4pp1

View 4pp1 on RCSB PDB site
Description: The crystal structure of Der p 1 allergen complexed with Fab fragment of mAb 5H8
Class: Immune system
Keywords: allergen, antibody, Immune system
Deposited on 2014-02-26, released 2015-04-08
Made obsolete by 5vcn on 2022-04-27

The last revision prior to the SCOPe 2.05 freeze date was dated 2015-04-08, with a file datestamp of 2015-04-03.
Experiment type: XRAY
Resolution: 3 Å
R-factor: N/A
AEROSPACI score: 0.13 (click here for full SPACI score report)

Chains and heterogens:

• Chain 'A':
  Compound: Peptidase 1
  Species: Dermatophagoides pteronyssinus [TaxId:6956]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P08176 (0-221)
• Chain 'B':
  Compound: Peptidase 1
  Species: Dermatophagoides pteronyssinus [TaxId:6956]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P08176 (0-221)
• Chain 'C':
  Compound: light chain of Fab fragment of mAb 5H8
  Species: Mus musculus [TaxId:10090]
  Database cross-references and differences (RAF-indexed):
  • PDB 4PP1 (0-209)
  Domains in SCOPe 2.05: d4pp1c1, d4pp1c2
• Chain 'D':
  Compound: heavy chain of Fab fragment of mAb 5H8
  Species: Mus musculus [TaxId:10090]
  Database cross-references and differences (RAF-indexed):
  • PDB 4PP1 (0-End)
• Chain 'E':
  Compound: light chain of Fab fragment of mAb 5H8
  Species: Mus musculus [TaxId:10090]
  Database cross-references and differences (RAF-indexed):
  • PDB 4PP1 (0-209)
  Domains in SCOPe 2.05: d4pp1e1, d4pp1e2
• Chain 'F':
  Compound: heavy chain of Fab fragment of mAb 5H8
  Species: Mus musculus [TaxId:10090]
  Database cross-references and differences (RAF-indexed):
  • PDB 4PP1 (0-End)
• Heterogens: CA, PO4, EDO, NAG, HOH

PDB Chain Sequences:

• Chain 'A':
  No sequence available.
  
  
• Chain 'B':
  No sequence available.
  
  
• Chain 'C':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >4pp1C (C:)
  diqmtqttsslsaslgdrvtiscrasqditnylnwyqqkpdgtvklliyytsrlhsgvps
  rfsgsgsgtdysltisnleqediatyfcqqgktlptfgggtkleikradaaptvsifpps
  seqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysmsstltl
  tkdeyerhnsytceathktstspivksfnr
  

  
  
• Chain 'D':
  No sequence available.
  
  
• Chain 'E':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >4pp1E (E:)
  diqmtqttsslsaslgdrvtiscrasqditnylnwyqqkpdgtvklliyytsrlhsgvps
  rfsgsgsgtdysltisnleqediatyfcqqgktlptfgggtkleikradaaptvsifpps
  seqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysmsstltl
  tkdeyerhnsytceathktstspivksfnr
  

  
  
• Chain 'F':
  No sequence available.