PDB entry 4phf

View 4phf on RCSB PDB site
Description: Crystal structure of Ypt7 covalently modified with GDP
Class: Endocytosis,exocytosis
Keywords: Ypt7, acryl-nucleotides, aGDP, covalent, GDP, Endocytosis, exocytosis
Deposited on 2014-05-06, released 2014-05-28
The last revision prior to the SCOPe 2.06 freeze date was dated 2014-05-28, with a file datestamp of 2014-05-23.
Experiment type: XRAY
Resolution: 1.95 Å
R-factor: 0.199
AEROSPACI score: 0.38 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: GTP-binding protein YPT7
    Species: Saccharomyces cerevisiae [TaxId:559292]
    Gene: YPT7, VAM4, YML001W, YM8270.02
    Database cross-references and differences (RAF-indexed):
    • Uniprot P32939 (Start-183)
      • engineered mutation (36)
    Domains in SCOPe 2.06: d4phfa_
  • Heterogens: 2UH, MG, NO3, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4phfA (A:)
ghmssrkknilkviilgdsgvgktslmhryvndkyscqykatigadfltkevtvdgdkva
tmqvwdtagqerfqslgvafyrgadccvlvydvtnassfenikswrdeflvhanvnspet
fpfvilgnkidaeeskkivseksaqelakslgdiplfltsaknainvdtafeeiarsalq
qnqa

    Sequence, based on observed residues (ATOM records): (download) 
    >4phfA (A:)
nilkviilgdsgvgktslmhryvndkysctigadfltkevtvdgdkvatmqvwdtgvafy
rgadccvlvydvtnassfenikswrdeflvhanvnspetfpfvilgnkidaeeskkivse
ksaqelakslgdiplfltsaknainvdtafeeiarsalqqnqa