PDB entry 4ogg

View 4ogg on RCSB PDB site
Description: Crystal Structure of Arabidopsis thaliana DJ-1d with glyoxylate as substrate analog
Class: lyase
Keywords: Glyoxalase, LYASE
Deposited on 2014-01-16, released 2014-10-15
The last revision prior to the SCOPe 2.08 freeze date was dated 2014-12-24, with a file datestamp of 2014-12-19.
Experiment type: XRAY
Resolution: 1.6 Å
R-factor: 0.185
AEROSPACI score: 0.5 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Protein DJ-1 homolog D
    Species: Arabidopsis thaliana [TaxId:3702]
    Gene: DJ1D, At3g02720, F13E7.34
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4ogga1, d4ogga2
  • Chain 'B':
    Compound: Protein DJ-1 homolog D
    Species: Arabidopsis thaliana [TaxId:3702]
    Gene: DJ1D, At3g02720, F13E7.34
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9M8R4 (0-385)
      • expression tag (386)
    Domains in SCOPe 2.08: d4oggb1, d4oggb2, d4oggb3
  • Chain 'C':
    Compound: Protein DJ-1 homolog D
    Species: Arabidopsis thaliana [TaxId:3702]
    Gene: DJ1D, At3g02720, F13E7.34
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9M8R4 (0-385)
      • expression tag (386-387)
    Domains in SCOPe 2.08: d4oggc1, d4oggc2, d4oggc3
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4oggA (A:)
nsrtvlilcgdymedyevmvpfqalqafgitvhtvcpgkkagdscptavhdfcghqtyfe
srghnftlnatfdevdlskydglvipggrapeylaltasvvelvkefsrsgkpiasixhg
qlilaaadtvngrkctayatvgpslvaagakwvepitpdvcvvdgslitaatyeghpefi
qlfvkalggkitgankrilflcgdymedyevkvpfqslqalgcqvdavcpekkagdrcpt
aihdfegdqtysekpghtfalttnfddlvsssydalvipggrapeylalnehvlnivkef
mnsekpvasixhgqqilaaagvlkgrkctaypavklnvvlgggtwlepdpidrcftdgnl
vtgaawpghpefvsqlmallgiqvsfhh

    Sequence, based on observed residues (ATOM records): (download) 
    >4oggA (A:)
nsrtvlilcgdymedyevmvpfqalqafgitvhtvcpgkkagdscptavhdfcghqtyfe
srghnftlnatfdevdlskydglvipggrapeylaltasvvelvkefsrsgkpiasixhg
qlilaaadtvngrkctayatvgpslvaagakwvepitpdvcvvdgslitaatyeghpefi
qlfvkalggkitgankrilflcgdymedyevkvpfqslqalgcqvdavcpekkagdrcpt
aihdfegdqtysekpghtfalttnfddlvsssydalvipggrapeylalnehvlnivkef
mnsekpvasixhgqqilaaagvlkgrkctaypavklnvvlgggtwlepdpidrcftdgnl
vtgaawpghpefvsqlmallgiqvsf

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4oggB (B:)
nsrtvlilcgdymedyevmvpfqalqafgitvhtvcpgkkagdscptavhdfcghqtyfe
srghnftlnatfdevdlskydglvipggrapeylaltasvvelvkefsrsgkpiasixhg
qlilaaadtvngrkctayatvgpslvaagakwvepitpdvcvvdgslitaatyeghpefi
qlfvkalggkitgankrilflcgdymedyevkvpfqslqalgcqvdavcpekkagdrcpt
aihdfegdqtysekpghtfalttnfddlvsssydalvipggrapeylalnehvlnivkef
mnsekpvasixhgqqilaaagvlkgrkctaypavklnvvlgggtwlepdpidrcftdgnl
vtgaawpghpefvsqlmallgiqvsfhh

    Sequence, based on observed residues (ATOM records): (download) 
    >4oggB (B:)
nsrtvlilcgdymedyevmvpfqalqafgitvhtvcpgkkagdscptavhdfcghqtyfe
srghnftlnatfdevdlskydglvipggrapeylaltasvvelvkefsrsgkpiasixhg
qlilaaadtvngrkctayatvgpslvaagakwvepitpdvcvvdgslitaatyeghpefi
qlfvkalggkitgankrilflcgdymedyevkvpfqslqalgcqvdavcpekkagdrcpt
aihdfegdqtysekpghtfalttnfddlvsssydalvipggrapeylalnehvlnivkef
mnsekpvasixhgqqilaaagvlkgrkctaypavklnvvlgggtwlepdpidrcftdgnl
vtgaawpghpefvsqlmallgiqvsfh

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >4oggC (C:)
nsrtvlilcgdymedyevmvpfqalqafgitvhtvcpgkkagdscptavhdfcghqtyfe
srghnftlnatfdevdlskydglvipggrapeylaltasvvelvkefsrsgkpiasixhg
qlilaaadtvngrkctayatvgpslvaagakwvepitpdvcvvdgslitaatyeghpefi
qlfvkalggkitgankrilflcgdymedyevkvpfqslqalgcqvdavcpekkagdrcpt
aihdfegdqtysekpghtfalttnfddlvsssydalvipggrapeylalnehvlnivkef
mnsekpvasixhgqqilaaagvlkgrkctaypavklnvvlgggtwlepdpidrcftdgnl
vtgaawpghpefvsqlmallgiqvsfhh