PDB entry 4o0n

View 4o0n on RCSB PDB site
Description: 2.4 Angstrom Resolution Crystal Structure of Putative Nucleoside Diphosphate Kinase from Toxoplasma gondii.
Class: transferase
Keywords: Structural Genomics, NIAID, National Institute of Allergy and Infectious Diseases, Center for Structural Genomics of Infectious Diseases, CSGID, 2-Layer Sandwich, Putative Nucleoside Diphosphate Kinase, TRANSFERASE
Deposited on 2013-12-13, released 2013-12-25
The last revision prior to the SCOPe 2.08 freeze date was dated 2021-01-27, with a file datestamp of 2021-01-22.
Experiment type: XRAY
Resolution: 2.4 Å
R-factor: N/A
AEROSPACI score: 0.32 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Nucleoside diphosphate kinase
    Species: Toxoplasma gondii ME49 [TaxId:508771]
    Gene: TGME49_295350
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4o0na_
  • Chain 'B':
    Compound: Nucleoside diphosphate kinase
    Species: Toxoplasma gondii ME49 [TaxId:508771]
    Gene: TGME49_295350
    Database cross-references and differences (RAF-indexed):
    • Uniprot S8FF85 (Start-154)
      • expression tag (155)
    Domains in SCOPe 2.08: d4o0nb1, d4o0nb2
  • Chain 'C':
    Compound: Nucleoside diphosphate kinase
    Species: Toxoplasma gondii ME49 [TaxId:508771]
    Gene: TGME49_295350
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4o0nc_
  • Chain 'D':
    Compound: Nucleoside diphosphate kinase
    Species: Toxoplasma gondii ME49 [TaxId:508771]
    Gene: TGME49_295350
    Database cross-references and differences (RAF-indexed):
    • Uniprot S8FF85 (Start-154)
      • expression tag (155)
    Domains in SCOPe 2.08: d4o0nd1, d4o0nd2
  • Chain 'E':
    Compound: Nucleoside diphosphate kinase
    Species: Toxoplasma gondii ME49 [TaxId:508771]
    Gene: TGME49_295350
    Database cross-references and differences (RAF-indexed):
    • Uniprot S8FF85 (Start-154)
      • expression tag (155)
    Domains in SCOPe 2.08: d4o0ne1, d4o0ne2
  • Chain 'F':
    Compound: Nucleoside diphosphate kinase
    Species: Toxoplasma gondii ME49 [TaxId:508771]
    Gene: TGME49_295350
    Database cross-references and differences (RAF-indexed):
    • Uniprot S8FF85 (Start-154)
      • expression tag (155)
    Domains in SCOPe 2.08: d4o0nf1, d4o0nf2
  • Chain 'G':
    Compound: Nucleoside diphosphate kinase
    Species: Toxoplasma gondii ME49 [TaxId:508771]
    Gene: TGME49_295350
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4o0ng_
  • Chain 'H':
    Compound: Nucleoside diphosphate kinase
    Species: Toxoplasma gondii ME49 [TaxId:508771]
    Gene: TGME49_295350
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4o0nh_
  • Chain 'I':
    Compound: Nucleoside diphosphate kinase
    Species: Toxoplasma gondii ME49 [TaxId:508771]
    Gene: TGME49_295350
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4o0ni_
  • Chain 'J':
    Compound: Nucleoside diphosphate kinase
    Species: Toxoplasma gondii ME49 [TaxId:508771]
    Gene: TGME49_295350
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4o0nj_
  • Chain 'K':
    Compound: Nucleoside diphosphate kinase
    Species: Toxoplasma gondii ME49 [TaxId:508771]
    Gene: TGME49_295350
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4o0nk_
  • Chain 'L':
    Compound: Nucleoside diphosphate kinase
    Species: Toxoplasma gondii ME49 [TaxId:508771]
    Gene: TGME49_295350
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4o0nl_
  • Heterogens: SO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4o0nA (A:)
maakqqertyimvkpdgvqrglvsevirrfeqrgyklvalkmkspdatlleehyadlkgk
pffpglisymtsgpvvcmvwegtdvvkqgrrmlgetrplesnpgtlrgdfcidvgrnivh
gsdsvesankeislwftpeeicewtsaqhkwvyeqgenlyfqsaghhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >4o0nA (A:)
akqqertyimvkpdgvqrglvsevirrfeqrgyklvalkmkspdatlleehyadlkgkpf
fpglisymtsgpvvcmvwegtdvvkqgrrmlgetrplesnpgtlrgdfcidvgrnivhgs
dsvesankeislwftpeeicewtsaqhkwvyeq

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4o0nB (B:)
maakqqertyimvkpdgvqrglvsevirrfeqrgyklvalkmkspdatlleehyadlkgk
pffpglisymtsgpvvcmvwegtdvvkqgrrmlgetrplesnpgtlrgdfcidvgrnivh
gsdsvesankeislwftpeeicewtsaqhkwvyeqgenlyfqsaghhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >4o0nB (B:)
akqqertyimvkpdgvqrglvsevirrfeqrgyklvalkmkspdatlleehyadlkgkpf
fpglisymtsgpvvcmvwegtdvvkqgrrmlgetrplesnpgtlrgdfcidvgrnivhgs
dsvesankeislwftpeeicewtsaqhkwvyeqg

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >4o0nC (C:)
maakqqertyimvkpdgvqrglvsevirrfeqrgyklvalkmkspdatlleehyadlkgk
pffpglisymtsgpvvcmvwegtdvvkqgrrmlgetrplesnpgtlrgdfcidvgrnivh
gsdsvesankeislwftpeeicewtsaqhkwvyeqgenlyfqsaghhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >4o0nC (C:)
akqqertyimvkpdgvqrglvsevirrfeqrgyklvalkmkspdatlleehyadlkgkpf
fpglisymtsgpvvcmvwegtdvvkqgrrmlgetrplesnpgtlrgdfcidvgrnivhgs
dsvesankeislwftpeeicewtsaqhkwvyeq

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >4o0nD (D:)
maakqqertyimvkpdgvqrglvsevirrfeqrgyklvalkmkspdatlleehyadlkgk
pffpglisymtsgpvvcmvwegtdvvkqgrrmlgetrplesnpgtlrgdfcidvgrnivh
gsdsvesankeislwftpeeicewtsaqhkwvyeqgenlyfqsaghhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >4o0nD (D:)
akqqertyimvkpdgvqrglvsevirrfeqrgyklvalkmkspdatlleehyadlkgkpf
fpglisymtsgpvvcmvwegtdvvkqgrrmlgetrplesnpgtlrgdfcidvgrnivhgs
dsvesankeislwftpeeicewtsaqhkwvyeqg

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >4o0nE (E:)
maakqqertyimvkpdgvqrglvsevirrfeqrgyklvalkmkspdatlleehyadlkgk
pffpglisymtsgpvvcmvwegtdvvkqgrrmlgetrplesnpgtlrgdfcidvgrnivh
gsdsvesankeislwftpeeicewtsaqhkwvyeqgenlyfqsaghhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >4o0nE (E:)
akqqertyimvkpdgvqrglvsevirrfeqrgyklvalkmkspdatlleehyadlkgkpf
fpglisymtsgpvvcmvwegtdvvkqgrrmlgetrplesnpgtlrgdfcidvgrnivhgs
dsvesankeislwftpeeicewtsaqhkwvyeqg

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >4o0nF (F:)
maakqqertyimvkpdgvqrglvsevirrfeqrgyklvalkmkspdatlleehyadlkgk
pffpglisymtsgpvvcmvwegtdvvkqgrrmlgetrplesnpgtlrgdfcidvgrnivh
gsdsvesankeislwftpeeicewtsaqhkwvyeqgenlyfqsaghhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >4o0nF (F:)
akqqertyimvkpdgvqrglvsevirrfeqrgyklvalkmkspdatlleehyadlkgkpf
fpglisymtsgpvvcmvwegtdvvkqgrrmlgetrplesnpgtlrgdfcidvgrnivhgs
dsvesankeislwftpeeicewtsaqhkwvyeqg

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >4o0nG (G:)
maakqqertyimvkpdgvqrglvsevirrfeqrgyklvalkmkspdatlleehyadlkgk
pffpglisymtsgpvvcmvwegtdvvkqgrrmlgetrplesnpgtlrgdfcidvgrnivh
gsdsvesankeislwftpeeicewtsaqhkwvyeqgenlyfqsaghhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >4o0nG (G:)
kqqertyimvkpdgvqrglvsevirrfeqrgyklvalkmkspdatlleehyadlkgkpff
pglisymtsgpvvcmvwegtdvvkqgrrmlgetrplesnpgtlrgdfcidvgrnivhgsd
svesankeislwftpeeicewtsaqhkwvyeq

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >4o0nH (H:)
maakqqertyimvkpdgvqrglvsevirrfeqrgyklvalkmkspdatlleehyadlkgk
pffpglisymtsgpvvcmvwegtdvvkqgrrmlgetrplesnpgtlrgdfcidvgrnivh
gsdsvesankeislwftpeeicewtsaqhkwvyeqgenlyfqsaghhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >4o0nH (H:)
akqqertyimvkpdgvqrglvsevirrfeqrgyklvalkmkspdatlleehyadlkgkpf
fpglisymtsgpvvcmvwegtdvvkqgrrmlgetrplesnpgtlrgdfcidvgrnivhgs
dsvesankeislwftpeeicewtsaqhkwvyeq

  • Chain 'I':
    Sequence, based on SEQRES records: (download) 
    >4o0nI (I:)
maakqqertyimvkpdgvqrglvsevirrfeqrgyklvalkmkspdatlleehyadlkgk
pffpglisymtsgpvvcmvwegtdvvkqgrrmlgetrplesnpgtlrgdfcidvgrnivh
gsdsvesankeislwftpeeicewtsaqhkwvyeqgenlyfqsaghhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >4o0nI (I:)
akqqertyimvkpdgvqrglvsevirrfeqrgyklvalkmkspdatlleehyadlkgkpf
fpglisymtsgpvvcmvwegtdvvkqgrrmlgetrplesnpgtlrgdfcidvgrnivhgs
dsvesankeislwftpeeicewtsaqhkwvyeq

  • Chain 'J':
    Sequence, based on SEQRES records: (download) 
    >4o0nJ (J:)
maakqqertyimvkpdgvqrglvsevirrfeqrgyklvalkmkspdatlleehyadlkgk
pffpglisymtsgpvvcmvwegtdvvkqgrrmlgetrplesnpgtlrgdfcidvgrnivh
gsdsvesankeislwftpeeicewtsaqhkwvyeqgenlyfqsaghhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >4o0nJ (J:)
akqqertyimvkpdgvqrglvsevirrfeqrgyklvalkmkspdatlleehyadlkgkpf
fpglisymtsgpvvcmvwegtdvvkqgrrmlgetrplesnpgtlrgdfcidvgrnivhgs
dsvesankeislwftpeeicewtsaqhkwvyeq

  • Chain 'K':
    Sequence, based on SEQRES records: (download) 
    >4o0nK (K:)
maakqqertyimvkpdgvqrglvsevirrfeqrgyklvalkmkspdatlleehyadlkgk
pffpglisymtsgpvvcmvwegtdvvkqgrrmlgetrplesnpgtlrgdfcidvgrnivh
gsdsvesankeislwftpeeicewtsaqhkwvyeqgenlyfqsaghhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >4o0nK (K:)
akqqertyimvkpdgvqrglvsevirrfeqrgyklvalkmkspdatlleehyadlkgkpf
fpglisymtsgpvvcmvwegtdvvkqgrrmlgetrplesnpgtlrgdfcidvgrnivhgs
dsvesankeislwftpeeicewtsaqhkwvyeq

  • Chain 'L':
    Sequence, based on SEQRES records: (download) 
    >4o0nL (L:)
maakqqertyimvkpdgvqrglvsevirrfeqrgyklvalkmkspdatlleehyadlkgk
pffpglisymtsgpvvcmvwegtdvvkqgrrmlgetrplesnpgtlrgdfcidvgrnivh
gsdsvesankeislwftpeeicewtsaqhkwvyeqgenlyfqsaghhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >4o0nL (L:)
akqqertyimvkpdgvqrglvsevirrfeqrgyklvalkmkspdatlleehyadlkgkpf
fpglisymtsgpvvcmvwegtdvvkqgrrmlgetrplesnpgtlrgdfcidvgrnivhgs
dsvesankeislwftpeeicewtsaqhkwvyeq