PDB entry 4nfw

View 4nfw on RCSB PDB site
Description: Structure and atypical hydrolysis mechanism of the Nudix hydrolase Orf153 (YmfB) from Escherichia coli
Class: hydrolase
Keywords: Nudix hydrolase; YmfB; Nucleoside triphosphatase; Metal ions-based catalysis, Nudix motif, phophatase, HYDROLASE
Deposited on 2013-11-01, released 2014-05-14
The last revision prior to the SCOPe 2.08 freeze date was dated 2015-03-11, with a file datestamp of 2015-03-06.
Experiment type: XRAY
Resolution: 2.3 Å
R-factor: N/A
AEROSPACI score: 0.23 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Putative Nudix hydrolase ymfB
    Species: Escherichia coli [TaxId:885275]
    Gene: i14_1356
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4nfwa_
  • Chain 'B':
    Compound: Putative Nudix hydrolase ymfB
    Species: Escherichia coli [TaxId:885275]
    Gene: i14_1356
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4nfwb_
  • Chain 'C':
    Compound: Putative Nudix hydrolase ymfB
    Species: Escherichia coli [TaxId:885275]
    Gene: i14_1356
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4nfwc_
  • Chain 'D':
    Compound: Putative Nudix hydrolase ymfB
    Species: Escherichia coli [TaxId:885275]
    Gene: i14_1356
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4nfwd_
  • Chain 'E':
    Compound: Putative Nudix hydrolase ymfB
    Species: Escherichia coli [TaxId:885275]
    Gene: i14_1356
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4nfwe_
  • Chain 'F':
    Compound: Putative Nudix hydrolase ymfB
    Species: Escherichia coli [TaxId:885275]
    Gene: i14_1356
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4nfwf_
  • Chain 'G':
    Compound: Putative Nudix hydrolase ymfB
    Species: Escherichia coli [TaxId:885275]
    Gene: i14_1356
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4nfwg_
  • Chain 'H':
    Compound: Putative Nudix hydrolase ymfB
    Species: Escherichia coli [TaxId:885275]
    Gene: i14_1356
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4nfwh_
  • Chain 'I':
    Compound: Putative Nudix hydrolase ymfB
    Species: Escherichia coli [TaxId:885275]
    Gene: i14_1356
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4nfwi_
  • Chain 'J':
    Compound: Putative Nudix hydrolase ymfB
    Species: Escherichia coli [TaxId:885275]
    Gene: i14_1356
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4nfwj_
  • Chain 'K':
    Compound: Putative Nudix hydrolase ymfB
    Species: Escherichia coli [TaxId:885275]
    Gene: i14_1356
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4nfwk_
  • Chain 'L':
    Compound: Putative Nudix hydrolase ymfB
    Species: Escherichia coli [TaxId:885275]
    Gene: i14_1356
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4nfwl_
  • Heterogens: MN, SO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4nfwA (A:)
mfkphvtvacvvhaegkflvveetingkalwnqpaghleadetlveaaarelweetgisa
qpqhfirmhqwiapdktpflrflfaieleqicptqphdsdidccrwvsaeeilqasnlrs
plvaesircyqsgqryplemigdfnwpftkgvi

    Sequence, based on observed residues (ATOM records): (download) 
    >4nfwA (A:)
mfkphvtvacvvhaegkflvveetingkalwnqpaghleadetlveaaarelweetgisa
qpqhfirmhqwiapdktpflrflfaieleqicptqphdsdidccrwvsaeeilqasnlrs
plvaesircyqsgqryplemigdfnwpftk

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4nfwB (B:)
mfkphvtvacvvhaegkflvveetingkalwnqpaghleadetlveaaarelweetgisa
qpqhfirmhqwiapdktpflrflfaieleqicptqphdsdidccrwvsaeeilqasnlrs
plvaesircyqsgqryplemigdfnwpftkgvi

    Sequence, based on observed residues (ATOM records): (download) 
    >4nfwB (B:)
mfkphvtvacvvhaegkflvveetingkalwnqpaghleadetlveaaarelweetgisa
qpqhfirmhqwiapdktpflrflfaieleqicptqphdsdidccrwvsaeeilqasnlrs
plvaesircyqsgqryplemigdfnwpftk

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >4nfwC (C:)
mfkphvtvacvvhaegkflvveetingkalwnqpaghleadetlveaaarelweetgisa
qpqhfirmhqwiapdktpflrflfaieleqicptqphdsdidccrwvsaeeilqasnlrs
plvaesircyqsgqryplemigdfnwpftkgvi

    Sequence, based on observed residues (ATOM records): (download) 
    >4nfwC (C:)
mfkphvtvacvvhaegkflvveetingkalwnqpaghleadetlveaaarelweetgisa
qpqhfirmhqwiapdktpflrflfaieleqicptqphdsdidccrwvsaeeilqasnlrs
plvaesircyqsgqryplemigdfnwpftk

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >4nfwD (D:)
mfkphvtvacvvhaegkflvveetingkalwnqpaghleadetlveaaarelweetgisa
qpqhfirmhqwiapdktpflrflfaieleqicptqphdsdidccrwvsaeeilqasnlrs
plvaesircyqsgqryplemigdfnwpftkgvi

    Sequence, based on observed residues (ATOM records): (download) 
    >4nfwD (D:)
mfkphvtvacvvhaegkflvveetingkalwnqpaghleadetlveaaarelweetgisa
qpqhfirmhqwiapdktpflrflfaieleqicptqphdsdidccrwvsaeeilqasnlrs
plvaesircyqsgqryplemigdfnwpftk

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >4nfwE (E:)
mfkphvtvacvvhaegkflvveetingkalwnqpaghleadetlveaaarelweetgisa
qpqhfirmhqwiapdktpflrflfaieleqicptqphdsdidccrwvsaeeilqasnlrs
plvaesircyqsgqryplemigdfnwpftkgvi

    Sequence, based on observed residues (ATOM records): (download) 
    >4nfwE (E:)
mfkphvtvacvvhaegkflvveetingkalwnqpaghleadetlveaaarelweetgisa
qpqhfirmhqwiapdktpflrflfaieleqicptqphdsdidccrwvsaeeilqasnlrs
plvaesircyqsgqryplemigdfnwpftk

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >4nfwF (F:)
mfkphvtvacvvhaegkflvveetingkalwnqpaghleadetlveaaarelweetgisa
qpqhfirmhqwiapdktpflrflfaieleqicptqphdsdidccrwvsaeeilqasnlrs
plvaesircyqsgqryplemigdfnwpftkgvi

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >4nfwG (G:)
mfkphvtvacvvhaegkflvveetingkalwnqpaghleadetlveaaarelweetgisa
qpqhfirmhqwiapdktpflrflfaieleqicptqphdsdidccrwvsaeeilqasnlrs
plvaesircyqsgqryplemigdfnwpftkgvi

    Sequence, based on observed residues (ATOM records): (download) 
    >4nfwG (G:)
mfkphvtvacvvhaegkflvveetingkalwnqpaghleadetlveaaarelweetgisa
qpqhfirmhqwiapdktpflrflfaieleqicptqphdsdidccrwvsaeeilqasnlrs
plvaesircyqsgqryplemigdfnwpftk

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >4nfwH (H:)
mfkphvtvacvvhaegkflvveetingkalwnqpaghleadetlveaaarelweetgisa
qpqhfirmhqwiapdktpflrflfaieleqicptqphdsdidccrwvsaeeilqasnlrs
plvaesircyqsgqryplemigdfnwpftkgvi

    Sequence, based on observed residues (ATOM records): (download) 
    >4nfwH (H:)
mfkphvtvacvvhaegkflvveetingkalwnqpaghleadetlveaaarelweetgisa
qpqhfirmhqwiapdktpflrflfaieleqicptqphdsdidccrwvsaeeilqasnlrs
plvaesircyqsgqryplemigdfnwpftk

  • Chain 'I':
    Sequence, based on SEQRES records: (download) 
    >4nfwI (I:)
mfkphvtvacvvhaegkflvveetingkalwnqpaghleadetlveaaarelweetgisa
qpqhfirmhqwiapdktpflrflfaieleqicptqphdsdidccrwvsaeeilqasnlrs
plvaesircyqsgqryplemigdfnwpftkgvi

    Sequence, based on observed residues (ATOM records): (download) 
    >4nfwI (I:)
mfkphvtvacvvhaegkflvvelwnqpaghleadetlveaaarelweetgisaqpqhfir
mhqwiapdktpflrflfaieleqicptqphdcrwvsaeeilqasnlrsplvaesircyqs
gqryplemigdfnwpftk

  • Chain 'J':
    Sequence, based on SEQRES records: (download) 
    >4nfwJ (J:)
mfkphvtvacvvhaegkflvveetingkalwnqpaghleadetlveaaarelweetgisa
qpqhfirmhqwiapdktpflrflfaieleqicptqphdsdidccrwvsaeeilqasnlrs
plvaesircyqsgqryplemigdfnwpftkgvi

    Sequence, based on observed residues (ATOM records): (download) 
    >4nfwJ (J:)
mfkphvtvacvvhaegkflvveetingkalwnqpaghleadetlveaaarelweetgisa
qpqhfirmhqwiapdktpflrflfaieleqicptqphdsdidccrwvsaeeilqasnlrs
plvaesircyqsgqryplemigdfnwpftkgv

  • Chain 'K':
    Sequence, based on SEQRES records: (download) 
    >4nfwK (K:)
mfkphvtvacvvhaegkflvveetingkalwnqpaghleadetlveaaarelweetgisa
qpqhfirmhqwiapdktpflrflfaieleqicptqphdsdidccrwvsaeeilqasnlrs
plvaesircyqsgqryplemigdfnwpftkgvi

    Sequence, based on observed residues (ATOM records): (download) 
    >4nfwK (K:)
mfkphvtvacvvhaegkflvveetingkalwnqpaghleadetlveaaarelweetgisa
qpqhfirmhqwiapdktpflrflfaieleqicptqphdsdidccrwvsaeeilqasnlrs
plvaesircyqsgqryplemigdfnwpftk

  • Chain 'L':
    Sequence, based on SEQRES records: (download) 
    >4nfwL (L:)
mfkphvtvacvvhaegkflvveetingkalwnqpaghleadetlveaaarelweetgisa
qpqhfirmhqwiapdktpflrflfaieleqicptqphdsdidccrwvsaeeilqasnlrs
plvaesircyqsgqryplemigdfnwpftkgvi

    Sequence, based on observed residues (ATOM records): (download) 
    >4nfwL (L:)
mfkphvtvacvvhaegkflvveelwnqpaghleadetlveaaarelweetgisaqpqhfi
rmhqwiapdktpflrflfaieleqicptqphdsccrwvsaeeilqasnlrsplvaesirc
yqsgqryplemigdfnwpftk