PDB entry 4n34

View 4n34 on RCSB PDB site
Description: Structure of langerin CRD I313 with alpha-MeGlcNAc
Class: sugar binding protein
Keywords: CRD carbohydrate complex, carbohydrate-recognition domain, C-type lectin on Langerhans cells, Carbohydrate/Sugar Binding, receptor on Langerhans cells, SUGAR BINDING PROTEIN
Deposited on 2013-10-06, released 2013-11-20
The last revision prior to the SCOPe 2.07 freeze date was dated 2014-01-22, with a file datestamp of 2014-01-17.
Experiment type: XRAY
Resolution: 1.75 Å
R-factor: 0.178
AEROSPACI score: 0.46 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: C-type lectin domain family 4 member K
    Species: Homo sapiens [TaxId:9606]
    Gene: CD207, CLEC4K
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9UJ71
      • variant (85)
      • engineered mutation (120)
    Domains in SCOPe 2.07: d4n34a_
  • Chain 'B':
    Compound: C-type lectin domain family 4 member K
    Species: Homo sapiens [TaxId:9606]
    Gene: CD207, CLEC4K
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9UJ71
      • variant (85)
      • engineered mutation (120)
    Domains in SCOPe 2.07: d4n34b_
  • Chain 'C':
    Compound: C-type lectin domain family 4 member K
    Species: Homo sapiens [TaxId:9606]
    Gene: CD207, CLEC4K
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9UJ71
      • variant (85)
      • engineered mutation (120)
    Domains in SCOPe 2.07: d4n34c_
  • Chain 'D':
    Compound: C-type lectin domain family 4 member K
    Species: Homo sapiens [TaxId:9606]
    Gene: CD207, CLEC4K
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9UJ71
      • variant (85)
      • engineered mutation (120)
    Domains in SCOPe 2.07: d4n34d_
  • Heterogens: 2F8, CA, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >4n34A (A:)
    qvvsqgwkyfkgnfyyfslipktwysaeqfcvsrnshltsvtseseqeflyktaggliyw
    igltkagmegdwswvddtpfnkvqsarfwipgepnnagnnehcgnikapslqawndapcd
    itflfickrpyvpsep
    

    Sequence, based on observed residues (ATOM records): (download)
    >4n34A (A:)
    gwkyfkgnfyyfslipktwysaeqfcvsrnshltsvtseseqeflyktaggliywigltk
    agmegdwswvddtpfnkvqsarfwipgepnnagnnehcgnikapslqawndapcditflf
    ickrpyvp
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >4n34B (B:)
    qvvsqgwkyfkgnfyyfslipktwysaeqfcvsrnshltsvtseseqeflyktaggliyw
    igltkagmegdwswvddtpfnkvqsarfwipgepnnagnnehcgnikapslqawndapcd
    itflfickrpyvpsep
    

    Sequence, based on observed residues (ATOM records): (download)
    >4n34B (B:)
    gwkyfkgnfyyfslipktwysaeqfcvsrnshltsvtseseqeflyktaggliywigltk
    agmegdwswvddtpfnkvqsarfwipgepnnagnnehcgnikapslqawndapcditflf
    ickrpyvp
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >4n34C (C:)
    qvvsqgwkyfkgnfyyfslipktwysaeqfcvsrnshltsvtseseqeflyktaggliyw
    igltkagmegdwswvddtpfnkvqsarfwipgepnnagnnehcgnikapslqawndapcd
    itflfickrpyvpsep
    

    Sequence, based on observed residues (ATOM records): (download)
    >4n34C (C:)
    qgwkyfkgnfyyfslipktwysaeqfcvsrnshltsvtseseqeflyktaggliywiglt
    kagmegdwswvddtpfnkvqsarfwipgepnnagnnehcgnikapslqawndapcditfl
    fickrpyvp
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >4n34D (D:)
    qvvsqgwkyfkgnfyyfslipktwysaeqfcvsrnshltsvtseseqeflyktaggliyw
    igltkagmegdwswvddtpfnkvqsarfwipgepnnagnnehcgnikapslqawndapcd
    itflfickrpyvpsep
    

    Sequence, based on observed residues (ATOM records): (download)
    >4n34D (D:)
    sqgwkyfkgnfyyfslipktwysaeqfcvsrnshltsvtseseqeflyktaggliywigl
    tkagmegdwswvddtpfnkvqsarfwipgepnnagnnehcgnikapslqawndapcditf
    lfickrpyv