PDB entry 4mq7

View 4mq7 on RCSB PDB site
Description: Structure of human CD1d-sulfatide
Class: immune system
Keywords: gamma-delta, T cell receptor, Humans, T cells, non-classical, lipids, CD1d, restriction, Immunoglobulin, major histocompatibility complex, antigen presentation, self-ligands, IMMUNE SYSTEM
Deposited on 2013-09-15, released 2013-12-18
The last revision prior to the SCOPe 2.05 freeze date was dated 2014-01-01, with a file datestamp of 2013-12-27.
Experiment type: XRAY
Resolution: 2.6 Å
R-factor: 0.224
AEROSPACI score: 0.23 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Antigen-presenting glycoprotein CD1d, Cd1d1 protein
    Species: HOMO SAPIENS, MUS MUSCULUS [TaxId:9606, 10090]
    Gene: CD1D, Cd1.2, Cd1d1
    Database cross-references and differences (RAF-indexed):
    • Uniprot P15813 (Start-184)
    • Uniprot Q7TMK5 (185-277)
      • expression tag (278)
    Domains in SCOPe 2.05: d4mq7a1, d4mq7a2
  • Chain 'B':
    Compound: Beta-2-microglobulin
    Species: Mus musculus [TaxId:10090]
    Gene: B2M
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d4mq7b_
  • Heterogens: NAG, CIS, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4mq7A (A:)
adpvpqrlfplrclqissfansswtrtdglawlgelqthswsndsdtvrslkpwsqgtfs
dqqwetlqhifrvyrssftrdvkefakmlrlsyplelqvsagcevhpgnasnnffhvafq
gkdilsfqgtsweptqeaplwvnlaiqvlnqdkwtretvqwllngtcpqfvsgllesgks
elkkqekpvawlssvpssahghrqlvchvsgfypkpvwvmwmrgdqeqqgthrgdflpna
detwylqatldveageeaglacrvkhsslggqdiilywsgr

    Sequence, based on observed residues (ATOM records): (download) 
    >4mq7A (A:)
rlfplrclqissfansswtrtdglawlgelqthswsndsdtvrslkpwsqgtfsdqqwet
lqhifrvyrssftrdvkefakmlrlsyplelqvsagcevhnnffhvafqgkdilsfqgts
weptqeaplwvnlaiqvlnqdkwtretvqwllngtcpqfvsgllesgkselkkqekpvaw
lssvpssahghrqlvchvsgfypkpvwvmwmrgdqeqqgthrgdflpnadetwylqatld
veageeaglacrvkhsslggqdiilyws

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4mq7B (B:)
iqktpqiqvysrhppengkpnilncyvtqfhpphieiqmlkngkkipkvemsdmsfskdw
sfyilahteftptetdtyacrvkhasmaepktvywdrdm

    Sequence, based on observed residues (ATOM records): (download) 
    >4mq7B (B:)
iqktpqiqvysrhppengkpnilncyvtqfhpphieiqmlkngkkipkvemsdmsfskdw
sfyilahteftptetdtyacrvkhasmaepktvywdrd