PDB entry 4mq7

View 4mq7 on RCSB PDB site
Description: Structure of human CD1d-sulfatide
Class: immune system
Keywords: gamma-delta, T cell receptor, Humans, T cells, non-classical, lipids, CD1d, restriction, Immunoglobulin, major histocompatibility complex, antigen presentation, self-ligands, IMMUNE SYSTEM
Deposited on 2013-09-15, released 2013-12-18
The last revision prior to the SCOPe 2.07 freeze date was dated 2017-11-15, with a file datestamp of 2017-11-10.
Experiment type: XRAY
Resolution: 2.6 Å
R-factor: N/A
AEROSPACI score: 0.2 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Antigen-presenting glycoprotein CD1d, Cd1d1 protein
    Species: Mus musculus [TaxId:10090]
    Gene: CD1D, Cd1.2, Cd1d1
    Database cross-references and differences (RAF-indexed):
    • Uniprot P15813 (Start-184)
    • Uniprot Q7TMK5 (185-277)
      • expression tag (278)
    Domains in SCOPe 2.07: d4mq7a1, d4mq7a2, d4mq7a3
  • Chain 'B':
    Compound: Beta-2-microglobulin
    Species: Mus musculus [TaxId:10090]
    Gene: B2M
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d4mq7b_
  • Heterogens: NAG, CIS, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >4mq7A (A:)
    adpvpqrlfplrclqissfansswtrtdglawlgelqthswsndsdtvrslkpwsqgtfs
    dqqwetlqhifrvyrssftrdvkefakmlrlsyplelqvsagcevhpgnasnnffhvafq
    gkdilsfqgtsweptqeaplwvnlaiqvlnqdkwtretvqwllngtcpqfvsgllesgks
    elkkqekpvawlssvpssahghrqlvchvsgfypkpvwvmwmrgdqeqqgthrgdflpna
    detwylqatldveageeaglacrvkhsslggqdiilywsgr
    

    Sequence, based on observed residues (ATOM records): (download)
    >4mq7A (A:)
    rlfplrclqissfansswtrtdglawlgelqthswsndsdtvrslkpwsqgtfsdqqwet
    lqhifrvyrssftrdvkefakmlrlsyplelqvsagcevhnnffhvafqgkdilsfqgts
    weptqeaplwvnlaiqvlnqdkwtretvqwllngtcpqfvsgllesgkselkkqekpvaw
    lssvpssahghrqlvchvsgfypkpvwvmwmrgdqeqqgthrgdflpnadetwylqatld
    veageeaglacrvkhsslggqdiilyws
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >4mq7B (B:)
    iqktpqiqvysrhppengkpnilncyvtqfhpphieiqmlkngkkipkvemsdmsfskdw
    sfyilahteftptetdtyacrvkhasmaepktvywdrdm
    

    Sequence, based on observed residues (ATOM records): (download)
    >4mq7B (B:)
    iqktpqiqvysrhppengkpnilncyvtqfhpphieiqmlkngkkipkvemsdmsfskdw
    sfyilahteftptetdtyacrvkhasmaepktvywdrd