PDB entry 4me6
View 4me6 on RCSB PDB site
Description: Crystal structure of D-alanine-D-alanine ligase A from Xanthomonas oryzae pathovar oryzae with ADP
Class: ligase
Keywords: ADP-depending enzyme, d-alanine-d-alanine ligase, Nucleotide binding, LIGASE
Deposited on
2013-08-25, released
2014-02-19
The last revision prior to the SCOPe 2.04 freeze date was dated
2014-02-19, with a file datestamp of
2014-02-14.
Experiment type: XRAY
Resolution: 2.1 Å
R-factor: 0.198
AEROSPACI score: 0.34
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: d-alanine--d-alanine ligase
Species: Xanthomonas oryzae pv. oryzae [TaxId:291331]
Gene: ddlA, ddl, XOO0352
Database cross-references and differences (RAF-indexed):
- Uniprot Q5H614 (40-End)
- see remark 999 (20-39)
- engineered mutation (345)
Domains in SCOPe 2.04: d4me6a1, d4me6a2 - Heterogens: MG, ADP, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>4me6A (A:)
mghhhhhhhssenlyfqghmrkirvglifggksaehevslqsarnildaldpqrfepvli
gidkqgqwhvndpdsfllhaddparialhrsgrgvallpgaqqqqlrpiqpeqalaqidv
vfpivhgtlgedgslqgllrmanlpfvgsgvlgsavamdkdmakrvlrdarlavapfvcf
drhtaahadvdtliaqlglplfvkpanqgssvgvsqvrtadafaaalalalaydhkvlve
aavagreiecavlgnavphasvcgevvvhdafysyatkyisehgaeivipadidaqtqqr
iqqiavqayqalgcagmarvdvflcadgrivinevntlpgftrisvypklwqasgldyrg
litrlielalerhtddqllrsavelh
Sequence, based on observed residues (ATOM records): (download)
>4me6A (A:)
rkirvglifggksaehevslqsarnildaldpqrfepvligidkqgqwhvndpdsfllha
ddparialhrsgrgvallpgaqqqqlrpiqaqidvvfpivhgtlgedgslqgllrmanlp
fvgsgvlgsavamdkdmakrvlrdarlavapfvcfdrhtahadvdtliaqlglplfvkpa
nqvgvsqvrtadafaaalalalaydhkvlveaavagreiecavlgnavphasvcgevvei
vipadidaqtqqriqqiavqayqalgcagmarvdvflcadgrivinevntlpgftrisvy
pklwqasgldyrglitrlielalerhtddqllrsave