PDB entry 4lyp

View 4lyp on RCSB PDB site
Description: Crystal Structure of Glycoside Hydrolase Family 5 Mannosidase from Rhizomucor miehei
Class: hydrolase
Keywords: Tim Barrel, Hydrolase, extracellular protein
Deposited on 2013-07-31, released 2014-08-06
The last revision prior to the SCOPe 2.04 freeze date was dated 2014-08-06, with a file datestamp of 2014-08-01.
Experiment type: XRAY
Resolution: 1.28 Å
R-factor: 0.121
AEROSPACI score: 0.73 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Exo-beta-1,4-mannosidase
    Species: Rhizomucor miehei [TaxId:4839]
    Database cross-references and differences (RAF-indexed):
    • PDB 4LYP (Start-448)
    Domains in SCOPe 2.04: d4lypa_
  • Chain 'B':
    Compound: Exo-beta-1,4-mannosidase
    Species: Rhizomucor miehei [TaxId:4839]
    Database cross-references and differences (RAF-indexed):
    • PDB 4LYP
    Domains in SCOPe 2.04: d4lypb_
  • Heterogens: GAI, TRS, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4lypA (A:)
mgsshhhhhhssglvprgshmasmtggqqmgrgsefafvkiasdgkgftrygepylirga
nywqgmnlgaddcsggdrkrmeleikqmaemginnlrvmassegpddqpyrmrpsmmpqp
gkynegvfvgldylldtmdrynmtavmtlgnfwqwsggfgqyvawitgnqtipypvgdvt
ydeftqfaarfyndseiapkanklfkdhiytvqnrrntvngkiykedpvimswqianepq
eapaswfeeistfikkgapkhlvsagleskldeydfdrahdhknidyttchcwvenwgiy
dpadpdglphaneymhdflesrskwaaqlnkpivmeefgmardawrnpedetykylpstp
tshkdeyyqkafnqivslasnrsfsgsnfwayggegrstyppnpygmvwlgdpphephgw
ysvysndttvqiikdynanllkvqkelsk

    Sequence, based on observed residues (ATOM records): (download) 
    >4lypA (A:)
sefafvkiasdgkgftrygepylirganywqgmnlgaddcsggdrkrmeleikqmaemgi
nnlrvmassegpddqpyrmrpsmmpqpgkynegvfvgldylldtmdrynmtavmtlgnfw
qwsggfgqyvawitgnqtipypvgdvtydeftqfaarfyndseiapkanklfkdhiytvq
nrrntvngkiykedpvimswqianepqeapaswfeeistfikkgapkhlvsaglesklde
ydfdrahdhknidyttchcwvenwgiydpadpdglphaneymhdflesrskwaaqlnkpi
vmeefgmardawrnpedetykylpstptshkdeyyqkafnqivslasnrsfsgsnfwayg
gegrstyppnpygmvwlgdpphephgwysvysndttvqiikdynanllkvqkelsk

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4lypB (B:)
mgsshhhhhhssglvprgshmasmtggqqmgrgsefafvkiasdgkgftrygepylirga
nywqgmnlgaddcsggdrkrmeleikqmaemginnlrvmassegpddqpyrmrpsmmpqp
gkynegvfvgldylldtmdrynmtavmtlgnfwqwsggfgqyvawitgnqtipypvgdvt
ydeftqfaarfyndseiapkanklfkdhiytvqnrrntvngkiykedpvimswqianepq
eapaswfeeistfikkgapkhlvsagleskldeydfdrahdhknidyttchcwvenwgiy
dpadpdglphaneymhdflesrskwaaqlnkpivmeefgmardawrnpedetykylpstp
tshkdeyyqkafnqivslasnrsfsgsnfwayggegrstyppnpygmvwlgdpphephgw
ysvysndttvqiikdynanllkvqkelsk

    Sequence, based on observed residues (ATOM records): (download) 
    >4lypB (B:)
gsefafvkiasdgkgftrygepylirganywqgmnlgaddcsggdrkrmeleikqmaemg
innlrvmassegpddqpyrmrpsmmpqpgkynegvfvgldylldtmdrynmtavmtlgnf
wqwsggfgqyvawitgnqtipypvgdvtydeftqfaarfyndseiapkanklfkdhiytv
qnrrntvngkiykedpvimswqianepqeapaswfeeistfikkgapkhlvsagleskld
eydfdrahdhknidyttchcwvenwgiydpadpdglphaneymhdflesrskwaaqlnkp
ivmeefgmardawrnpedetykylpstptshkdeyyqkafnqivslasnrsfsgsnfway
ggegrstyppnpygmvwlgdpphephgwysvysndttvqiikdynanllkvqkel