PDB entry 4lf2

View 4lf2 on RCSB PDB site
Description: Hexameric Form II RuBisCO from Rhodopseudomonas palustris, activated and complexed with sulfate and magnesium
Class: lyase, oxidoreductase
Keywords: Form II, CbbM 2-CABP, Transition-State Analog, Reaction Intermediate Analogue, photosynthesis, photosynthetic carbon fixation, lyase, oxidoreductase
Deposited on 2013-06-26, released 2014-06-25
The last revision prior to the SCOPe 2.05 freeze date was dated 2014-06-25, with a file datestamp of 2014-06-20.
Experiment type: XRAY
Resolution: 2.38 Å
R-factor: 0.205
AEROSPACI score: 0.28 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Ribulose bisphosphate carboxylase
    Species: Rhodopseudomonas palustris [TaxId:258594]
    Gene: cbbM, RPA4641, Rpal_5122
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d4lf2a1, d4lf2a2
  • Chain 'B':
    Compound: Ribulose bisphosphate carboxylase
    Species: Rhodopseudomonas palustris [TaxId:258594]
    Gene: cbbM, RPA4641, Rpal_5122
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d4lf2b1, d4lf2b2
  • Chain 'C':
    Compound: Ribulose bisphosphate carboxylase
    Species: Rhodopseudomonas palustris [TaxId:258594]
    Gene: cbbM, RPA4641, Rpal_5122
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d4lf2c1, d4lf2c2
  • Chain 'D':
    Compound: Ribulose bisphosphate carboxylase
    Species: Rhodopseudomonas palustris [TaxId:258594]
    Gene: cbbM, RPA4641, Rpal_5122
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d4lf2d1, d4lf2d2
  • Chain 'E':
    Compound: Ribulose bisphosphate carboxylase
    Species: Rhodopseudomonas palustris [TaxId:258594]
    Gene: cbbM, RPA4641, Rpal_5122
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d4lf2e1, d4lf2e2
  • Chain 'F':
    Compound: Ribulose bisphosphate carboxylase
    Species: Rhodopseudomonas palustris [TaxId:258594]
    Gene: cbbM, RPA4641, Rpal_5122
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d4lf2f1, d4lf2f2
  • Heterogens: MG, SO4, CO3, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4lf2A (A:)
mgsshhhhhhssglvprgshmdqsnryanlnlkeseliaggrhvlcayimkpkagfgnfi
qtaahfaaesstgtnvevsttddftrgvdalvyevdeanslmkiaypielfdrnvidgra
miasfltltignnqgmgdveyakmydfyvppaylklfdgpsttikdlwrvlgrpvinggf
ivgtiikpklglrpqpfanacydfwlggdfikndepqgnqvfapfkdtvravadamrraq
dktgeaklfsfnitaddhyemlargefiletfadnadhiaflvdgyvagpaavttarraf
pkqylhyhraghgavtspqskrgytafvlskmarlqgasgihtgtmgfgkmegeaadrai
aymitedaadgpyfhqewlgmnpttpiisggmnalrmpgffdnlghsnlimtagggafgh
vdggaagakslrqaeqcwkqgadpvefakdhrefarafesfpqdadklypnwraklkpqa
a

    Sequence, based on observed residues (ATOM records): (download) 
    >4lf2A (A:)
mdqsnryanlnlkeseliaggrhvlcayimkpkagfgnfiqtaahfaaesstgtnvevst
tddftrgvdalvyevdeanslmkiaypielfdrnvidgramiasfltltignnqgmgdve
yakmydfyvppaylklfdgpsttikdlwrvlgrpvinggfivgtiikpklglrpqpfana
cydfwlggdfikndepqgnqvfapfkdtvravadamrraqdktgeaklfsfnitaddhye
mlargefiletfadnadhiaflvdgyvagpaavttarrafpkqylhyhraghgavtspqs
krgytafvlskmarlqgasgihtgtmgfgkmegeaadraiaymitedaadgpyfhqewlg
mnpttpiisggmnalrmpgffdnlghsnlimtagggafghvdggaagakslrqaeqcwkq
gadpvefakdhrefarafesfpqdadklypnwraklk

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4lf2B (B:)
mgsshhhhhhssglvprgshmdqsnryanlnlkeseliaggrhvlcayimkpkagfgnfi
qtaahfaaesstgtnvevsttddftrgvdalvyevdeanslmkiaypielfdrnvidgra
miasfltltignnqgmgdveyakmydfyvppaylklfdgpsttikdlwrvlgrpvinggf
ivgtiikpklglrpqpfanacydfwlggdfikndepqgnqvfapfkdtvravadamrraq
dktgeaklfsfnitaddhyemlargefiletfadnadhiaflvdgyvagpaavttarraf
pkqylhyhraghgavtspqskrgytafvlskmarlqgasgihtgtmgfgkmegeaadrai
aymitedaadgpyfhqewlgmnpttpiisggmnalrmpgffdnlghsnlimtagggafgh
vdggaagakslrqaeqcwkqgadpvefakdhrefarafesfpqdadklypnwraklkpqa
a

    Sequence, based on observed residues (ATOM records): (download) 
    >4lf2B (B:)
mdqsnryanlnlkeseliaggrhvlcayimkpkagfgnfiqtaahfaaesstgtnvevst
tddftrgvdalvyevdeanslmkiaypielfdrnvidgramiasfltltignnqgmgdve
yakmydfyvppaylklfdgpsttikdlwrvlgrpvinggfivgtiikpklglrpqpfana
cydfwlggdfikndepqgnqvfapfkdtvravadamrraqdktgeaklfsfnitaddhye
mlargefiletfadnadhiaflvdgyvagpaavttarrafpkqylhyhraghgavtspqs
krgytafvlskmarlqgasgihtgtmgfgkmegeaadraiaymitedaadgpyfhqewlg
mnpttpiisggmnalrmpgffdnlghsnlimtagggafghvdggaagakslrqaeqcwkq
gadpvefakdhrefarafesfpqdadklypnwr

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >4lf2C (C:)
mgsshhhhhhssglvprgshmdqsnryanlnlkeseliaggrhvlcayimkpkagfgnfi
qtaahfaaesstgtnvevsttddftrgvdalvyevdeanslmkiaypielfdrnvidgra
miasfltltignnqgmgdveyakmydfyvppaylklfdgpsttikdlwrvlgrpvinggf
ivgtiikpklglrpqpfanacydfwlggdfikndepqgnqvfapfkdtvravadamrraq
dktgeaklfsfnitaddhyemlargefiletfadnadhiaflvdgyvagpaavttarraf
pkqylhyhraghgavtspqskrgytafvlskmarlqgasgihtgtmgfgkmegeaadrai
aymitedaadgpyfhqewlgmnpttpiisggmnalrmpgffdnlghsnlimtagggafgh
vdggaagakslrqaeqcwkqgadpvefakdhrefarafesfpqdadklypnwraklkpqa
a

    Sequence, based on observed residues (ATOM records): (download) 
    >4lf2C (C:)
mdqsnryanlnlkeseliaggrhvlcayimkpkagfgnfiqtaahfaaesstgtnvevst
tddftrgvdalvyevdeanslmkiaypielfdrnvidgramiasfltltignnqgmgdve
yakmydfyvppaylklfdgpsttikdlwrvlgrpvinggfivgtiikpklglrpqpfana
cydfwlggdfikndepqgnqvfapfkdtvravadamrraqdktgeaklfsfnitaddhye
mlargefiletfadnadhiaflvdgyvagpaavttarrafpkqylhyhraghgavtspqs
krgytafvlskmarlqgasgihtgtmgfgkmegeaadraiaymitedaadgpyfhqewlg
mnpttpiisggmnalrmpgffdnlghsnlimtagggafghvdggaagakslrqaeqcwkq
gadpvefakdhrefarafesfpqdadklypnwr

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >4lf2D (D:)
mgsshhhhhhssglvprgshmdqsnryanlnlkeseliaggrhvlcayimkpkagfgnfi
qtaahfaaesstgtnvevsttddftrgvdalvyevdeanslmkiaypielfdrnvidgra
miasfltltignnqgmgdveyakmydfyvppaylklfdgpsttikdlwrvlgrpvinggf
ivgtiikpklglrpqpfanacydfwlggdfikndepqgnqvfapfkdtvravadamrraq
dktgeaklfsfnitaddhyemlargefiletfadnadhiaflvdgyvagpaavttarraf
pkqylhyhraghgavtspqskrgytafvlskmarlqgasgihtgtmgfgkmegeaadrai
aymitedaadgpyfhqewlgmnpttpiisggmnalrmpgffdnlghsnlimtagggafgh
vdggaagakslrqaeqcwkqgadpvefakdhrefarafesfpqdadklypnwraklkpqa
a

    Sequence, based on observed residues (ATOM records): (download) 
    >4lf2D (D:)
mdqsnryanlnlkeseliaggrhvlcayimkpkagfgnfiqtaahfaaesstgtnvevst
tddftrgvdalvyevdeanslmkiaypielfdrnvidgramiasfltltignnqgmgdve
yakmydfyvppaylklfdgpsttikdlwrvlgrpvinggfivgtiikpklglrpqpfana
cydfwlggdfikndepqgnqvfapfkdtvravadamrraqdktgeaklfsfnitaddhye
mlargefiletfadnadhiaflvdgyvagpaavttarrafpkqylhyhraghgavtspqs
krgytafvlskmarlqgasgihtgtmgfgkmegeaadraiaymitedaadgpyfhqewlg
mnpttpiisggmnalrmpgffdnlghsnlimtagggafghvdggaagakslrqaeqcwkq
gadpvefakdhrefarafesfpqdadklypnwraklk

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >4lf2E (E:)
mgsshhhhhhssglvprgshmdqsnryanlnlkeseliaggrhvlcayimkpkagfgnfi
qtaahfaaesstgtnvevsttddftrgvdalvyevdeanslmkiaypielfdrnvidgra
miasfltltignnqgmgdveyakmydfyvppaylklfdgpsttikdlwrvlgrpvinggf
ivgtiikpklglrpqpfanacydfwlggdfikndepqgnqvfapfkdtvravadamrraq
dktgeaklfsfnitaddhyemlargefiletfadnadhiaflvdgyvagpaavttarraf
pkqylhyhraghgavtspqskrgytafvlskmarlqgasgihtgtmgfgkmegeaadrai
aymitedaadgpyfhqewlgmnpttpiisggmnalrmpgffdnlghsnlimtagggafgh
vdggaagakslrqaeqcwkqgadpvefakdhrefarafesfpqdadklypnwraklkpqa
a

    Sequence, based on observed residues (ATOM records): (download) 
    >4lf2E (E:)
dqsnryanlnlkeseliaggrhvlcayimkpkagfgnfiqtaahfaaesstgtnvevstt
ddftrgvdalvyevdeanslmkiaypielfdrnvidgramiasfltltignnqgmgdvey
akmydfyvppaylklfdgpsttikdlwrvlgrpvinggfivgtiikpklglrpqpfanac
ydfwlggdfikndepqgnqvfapfkdtvravadamrraqdktgeaklfsfnitaddhyem
largefiletfadnadhiaflvdgyvagpaavttarrafpkqylhyhraghgavtspqsk
rgytafvlskmarlqgasgihtgtmgfgkmegeaadraiaymitedaadgpyfhqewlgm
npttpiisggmnalrmpgffdnlghsnlimtagggafghvdggaagakslrqaeqcwkqg
adpvefakdhrefarafesfpqdadklypnwrakl

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >4lf2F (F:)
mgsshhhhhhssglvprgshmdqsnryanlnlkeseliaggrhvlcayimkpkagfgnfi
qtaahfaaesstgtnvevsttddftrgvdalvyevdeanslmkiaypielfdrnvidgra
miasfltltignnqgmgdveyakmydfyvppaylklfdgpsttikdlwrvlgrpvinggf
ivgtiikpklglrpqpfanacydfwlggdfikndepqgnqvfapfkdtvravadamrraq
dktgeaklfsfnitaddhyemlargefiletfadnadhiaflvdgyvagpaavttarraf
pkqylhyhraghgavtspqskrgytafvlskmarlqgasgihtgtmgfgkmegeaadrai
aymitedaadgpyfhqewlgmnpttpiisggmnalrmpgffdnlghsnlimtagggafgh
vdggaagakslrqaeqcwkqgadpvefakdhrefarafesfpqdadklypnwraklkpqa
a

    Sequence, based on observed residues (ATOM records): (download) 
    >4lf2F (F:)
dqsnryanlnlkeseliaggrhvlcayimkpkagfgnfiqtaahfaaesstgtnvevstt
ddftrgvdalvyevdeanslmkiaypielfdrnvidgramiasfltltignnqgmgdvey
akmydfyvppaylklfdgpsttikdlwrvlgrpvinggfivgtiikpklglrpqpfanac
ydfwlggdfikndepqgnqvfapfkdtvravadamrraqdktgeaklfsfnitaddhyem
largefiletfadnadhiaflvdgyvagpaavttarrafpkqylhyhraghgavtspqsk
rgytafvlskmarlqgasgihtgtmgfgkmegeaadraiaymitedaadgpyfhqewlgm
npttpiisggmnalrmpgffdnlghsnlimtagggafghvdggaagakslrqaeqcwkqg
adpvefakdhrefarafesfpqdadklypnwraklk