PDB entry 4ldt

View 4ldt on RCSB PDB site
Description: The structure of h/ceOTUB1-ubiquitin aldehyde-UBCH5B~Ub
Class: hydrolase regulator
Keywords: isopeptidase, ubiquitin-conjugating, post-translational modification, ubiquitin, ubiquitin-aldehyde, HYDROLASE REGULATOR
Deposited on 2013-06-25, released 2013-08-14
The last revision prior to the SCOPe 2.06 freeze date was dated 2013-09-04, with a file datestamp of 2013-08-30.
Experiment type: XRAY
Resolution: 1.9 Å
R-factor: 0.193
AEROSPACI score: 0.49 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Ubiquitin thioesterase otubain-like
    Species: Homo sapiens, Caenorhabditis elegans [TaxId:9606, 6239]
    Gene: OTUB1, OTB1, OTU1, HSPC263, C25D7.8, otub-1
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Ubiquitin aldehyde
    Species: Homo sapiens [TaxId:9606]
    Gene: UBC
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d4ldtb_
  • Chain 'C':
    Compound: ubiquitin-conjugating enzyme e2 d2
    Species: Homo sapiens [TaxId:9606]
    Gene: UBE2D2, PUBC1, UBC4, UBC5B, UBCH4, UBCH5B
    Database cross-references and differences (RAF-indexed):
    • Uniprot P62837 (1-147)
      • expression tag (0)
      • engineered mutation (85)
    Domains in SCOPe 2.06: d4ldtc1, d4ldtc2
  • Chain 'D':
    Compound: Ubiquitin
    Species: Homo sapiens [TaxId:9606]
    Gene: UBC
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d4ldtd_
  • Heterogens: EDO, MG, HOH

PDB Chain Sequences:

  • Chain 'A':
    No sequence available.

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download)
    >4ldtB (B:)
    mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
    iqkestlhlvlrlrgg
    

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download)
    >4ldtC (C:)
    gmalkrihkelndlardppaqcsagpvgddmfhwqatimgpndspyqggvffltihfptd
    ypfkppkvafttriyhpninsngsisldilrsqwspaltiskvllsicsllcdpnpddpl
    vpeiariyktdrekynriarewtqkyam
    

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download)
    >4ldtD (D:)
    mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
    iqkestlhlvlrlrgg