PDB entry 4kyi
View 4kyi on RCSB PDB site
Description: Crystal structure of the phospholipase VipD from Legionella pneumophila in complex with the human GTPase Rab5
Class: protein binding/transport protein
Keywords: Phospholipase, protein binding-transport protein complex
Deposited on
2013-05-29, released
2014-08-13
The last revision prior to the SCOPe 2.06 freeze date was dated
2015-07-29, with a file datestamp of
2015-07-24.
Experiment type: XRAY
Resolution: 3.08 Å
R-factor: N/A
AEROSPACI score: 0.13
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: vipd
Species: Legionella pneumophila subsp. pneumophila [TaxId:272624]
Gene: vipD, lpg2831
Database cross-references and differences (RAF-indexed):
- Chain 'B':
Compound: Ras-related protein Rab-5C
Species: Homo sapiens [TaxId:9606]
Gene: RAB5C, RABL
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d4kyib_ - Chain 'C':
Compound: vipd
Species: Legionella pneumophila subsp. pneumophila [TaxId:272624]
Gene: vipD, lpg2831
Database cross-references and differences (RAF-indexed):
- Chain 'D':
Compound: Ras-related protein Rab-5C
Species: Homo sapiens [TaxId:9606]
Gene: RAB5C, RABL
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d4kyid_ - Chain 'E':
Compound: vipd
Species: Legionella pneumophila subsp. pneumophila [TaxId:272624]
Gene: vipD, lpg2831
Database cross-references and differences (RAF-indexed):
- Chain 'F':
Compound: Ras-related protein Rab-5C
Species: Homo sapiens [TaxId:9606]
Gene: RAB5C, RABL
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d4kyif_ - Chain 'G':
Compound: vipd
Species: Legionella pneumophila subsp. pneumophila [TaxId:272624]
Gene: vipD, lpg2831
Database cross-references and differences (RAF-indexed):
- Chain 'H':
Compound: Ras-related protein Rab-5C
Species: Homo sapiens [TaxId:9606]
Gene: RAB5C, RABL
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d4kyih_ - Heterogens: EDO, GOL, GNP, MG
PDB Chain Sequences:
- Chain 'A':
No sequence available.
- Chain 'B':
Sequence, based on SEQRES records: (download)
>4kyiB (B:)
gamgskicqfklvllgesavgksslvlrfvkgqfheyqestigaafltqtvclddttvkf
eiwdtagleryhslapmyyrgaqaaivvyditntdtfaraknwvkelqrqaspniviala
gnkadlaskravefqeaqayaddnsllfmetsaktamnvneifmaiakkl
Sequence, based on observed residues (ATOM records): (download)
>4kyiB (B:)
icqfklvllgesavgksslvlrfvkgqfheyqestigaafltqtvclddttvkfeiwdta
gleryhslapmyyrgaqaaivvyditntdtfaraknwvkelqrqaspnivialagnkadl
askravefqeaqayaddnsllfmetsaktamnvneifmaiakkl
- Chain 'C':
No sequence available.
- Chain 'D':
Sequence, based on SEQRES records: (download)
>4kyiD (D:)
gamgskicqfklvllgesavgksslvlrfvkgqfheyqestigaafltqtvclddttvkf
eiwdtagleryhslapmyyrgaqaaivvyditntdtfaraknwvkelqrqaspniviala
gnkadlaskravefqeaqayaddnsllfmetsaktamnvneifmaiakkl
Sequence, based on observed residues (ATOM records): (download)
>4kyiD (D:)
icqfklvllgesavgksslvlrfvkgqfheyqestigaafltqtvclddttvkfeiwdta
gleryhslapmyyrgaqaaivvyditntdtfaraknwvkelqrqaspnivialagnkadl
askravefqeaqayaddnsllfmetsaktamnvneifmaiakkl
- Chain 'E':
No sequence available.
- Chain 'F':
Sequence, based on SEQRES records: (download)
>4kyiF (F:)
gamgskicqfklvllgesavgksslvlrfvkgqfheyqestigaafltqtvclddttvkf
eiwdtagleryhslapmyyrgaqaaivvyditntdtfaraknwvkelqrqaspniviala
gnkadlaskravefqeaqayaddnsllfmetsaktamnvneifmaiakkl
Sequence, based on observed residues (ATOM records): (download)
>4kyiF (F:)
icqfklvllgesavgksslvlrfvkgqfheyqestigaafltqtvclddttvkfeiwdta
gleryhslapmyyrgaqaaivvyditntdtfaraknwvkelqrqaspnivialagnkadl
askravefqeaqayaddnsllfmetsaktamnvneifmaiakkl
- Chain 'G':
No sequence available.
- Chain 'H':
Sequence, based on SEQRES records: (download)
>4kyiH (H:)
gamgskicqfklvllgesavgksslvlrfvkgqfheyqestigaafltqtvclddttvkf
eiwdtagleryhslapmyyrgaqaaivvyditntdtfaraknwvkelqrqaspniviala
gnkadlaskravefqeaqayaddnsllfmetsaktamnvneifmaiakkl
Sequence, based on observed residues (ATOM records): (download)
>4kyiH (H:)
icqfklvllgesavgksslvlrfvkgqfheyqestigaafltqtvclddttvkfeiwdta
gleryhslapmyyrgaqaaivvyditntdtfaraknwvkelqrqaspnivialagnkadl
askravefqeaqayaddnsllfmetsaktamnvneifmaiakkl